FMO01652.5prime Sequence
1070 bp (1068 high quality bases) assembled on 2008-04-11
> FMO01652.5prime
CAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCGGCAGTGCG
GTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAGTTGTCCCA
GTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTATAGGACGC
TGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACTGCCTGGAACTG
CTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAAAGCAGCGC
CGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCGAGGACCAC
AGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAGGGGCTTTG
ATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTTATTCAACG
GACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCACCCAGTGC
TCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACATTGAGTCG
GCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGTGGGCGAGT
GCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGATGGACTTGT
TTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATCGGAAAACT
GCAGAGGACACGTTCACTGAGTACACACGCTACCACGCCAAGCTGCTTAA
GCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTACTTCCTAT
TCCGTCTTATTGACGCGAAGCGTGTGGGCTGGGTTTCGGGCCTTACGCAA
GCTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTAAGTACGTAGC
CAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGCTGCTCATTCTG
GCCCGCCCGGGTTGGGCGGAATGTTTGGTGACATATTCATCGCCTTATGG
CGGGCTTTGAGGAAGATGATGCGGACGATCATGACCCGACCCTGGAGGCG
GCAACGAGAATAACGAACTGGAAGCCAGCTTTTCTAGACCATTCGGTTGG
CGCCGCGGGCCAAGGTAAGT
FMO01652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9853-RC | 1508 | CG9853-RC | 117..1133 | 9..1023 | 4940 | 99.3 | Plus |
| CG9853-RB | 1818 | CG9853-RB | 604..1620 | 9..1023 | 4940 | 99.3 | Plus |
| CG9853-RA | 1331 | CG9853-RA | 117..1133 | 9..1023 | 4940 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4398756..4399385 | 1023..396 | 2880 | 98.9 | Minus |
| 3R | 32079331 | 3R | 4399446..4399681 | 395..160 | 1180 | 100 | Minus |
| 3R | 32079331 | 3R | 4399739..4399893 | 163..9 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:04 has no hits.
FMO01652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:55 Download gff for
FMO01652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9853-RB | 604..1624 | 9..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:01 Download gff for
FMO01652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9853-RA | 117..1137 | 9..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:16 Download gff for
FMO01652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9853-RA | 117..1137 | 9..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:16 Download gff for
FMO01652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4398752..4399385 | 396..1029 | 98 | <- | Minus |
| 3R | 4399446..4399680 | 161..395 | 100 | <- | Minus |
| 3R | 4399742..4399893 | 9..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:01 Download gff for
FMO01652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 224474..225107 | 396..1029 | 98 | <- | Minus |
| arm_3R | 225168..225402 | 161..395 | 100 | <- | Minus |
| arm_3R | 225464..225615 | 9..160 | 100 | | Minus |
