FMO01653.5prime Sequence
1252 bp (988 high quality bases) assembled on 2008-04-11
> FMO01653.5prime
ATAATACGAAGTTATCAGTCGACATGAAACTAAAGCCGGTTGAACGCAAT
GATGGCTCGGATGATGAGAGCGAGGAGGAAATGCCAAATGATCATCCCGA
ATCCGAAGACTCCAATATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATG
AGGAGGAGATGGAGGAGGATGAGGAGGAGGATCGGCAGGACGGTGACGAG
GTCGAGACAGATAATCTCGGAGCTGATCGCAATCCCTATCCCACTCCGCC
GCCTGATGATGGGTCGAAACTGGTGCCCCCCGATTCTGACAACCCCAAGT
CGATGGTCCCAAAACCAAAGGGTACGCTCATATCCCTAGCTCTTATGGCC
ATCGGGAAGTTGGCGAGCCGATCGGGCTCATCGGTTCAGGCCATAATGAC
ATACCTAAAGGACAATGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCC
GCCTCCTCCATCGAGCTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTG
ATGGTTAAGCGATCCTTTAAACTCACCGATAAGCAGAAGAACTCCTCAAA
GGCTGTGGAGAAAATGAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAG
CCAAAGTTGAGAAAGTTTTAAAGGAGAAGATTCAAAAGAAAGAGGCCAAG
GCGAAGATGAAGGAAAAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAAC
CGAGCGGAAAACAAAACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAA
CCAAGGATAATCCGCCAGCATCTAAAGCAGCTTCATCCGCTGCCGCGCGG
CCATGCTGGAAACATCCCAGACAGCGATTCCTGAAGCGGGAAAGAAGCCG
GCCAAAACCAAAGTCAAGCTACAAGCGGATTCATCCGAGGCGGGAAAGAC
TAAAAGTCGCGAAAGTCCATTGGAACTCTGGCTCAGCTCAAGGCAGCCAG
GCCGAAAGTCAGCGTCAGAAACTGGTGGCTGGAAAGGAGCTCCAACCCGG
ATCTTTTCATATGGAGGCCAGCCAGGTCGACTCTCAGGAGCTACCAAGGC
GAGACGCAAGCGCCAAGTTGAAGCTTTCTTGACCATTCGTTTGGCGCGCG
GGCCCGGGTAGTGGTCCTAATCTATATCCTGATCTAATTGCATATTCCAA
CACCCTAGGCCTACGGGAAATCTGTCATTGACTACGCCTTGTATCTCACA
TAAAAAGCCCGGCGGTGACACCGAAGCGTTCTTCATGATACGATACTCGA
TA
FMO01653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BigH1-RA | 1279 | CG3509-RA | 140..1199 | 22..1068 | 4865 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14663589..14664287 | 22..720 | 3495 | 100 | Plus |
| 3R | 32079331 | 3R | 14664381..14664742 | 720..1068 | 1115 | 91.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:47:58 has no hits.
FMO01653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:58 Download gff for
FMO01653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3509-RA | 147..1206 | 22..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:32 Download gff for
FMO01653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3509-RA | 147..1206 | 22..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:14 Download gff for
FMO01653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BigH1-RA | 140..1199 | 22..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:14 Download gff for
FMO01653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14664381..14664742 | 720..1070 | 93 | <- | Plus |
| 3R | 14663589..14664286 | 22..719 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:32 Download gff for
FMO01653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10490103..10490464 | 720..1070 | 93 | <- | Plus |
| arm_3R | 10489311..10490008 | 22..719 | 100 | -> | Plus |
