FMO01654.5prime Sequence
944 bp (944 high quality bases) assembled on 2008-04-11
> FMO01654.5prime
AAAACAAAGTTATCAGTCGACATGGGGAAAACATCAAAGGACAAACGAGA
TATCTATTACCGACAAGCCAAAGACGAAGGCTGGAGGGCCAGGAGTGCCT
TCAAGTTGCTCCACGTGGACGAAGCCTACGGAATTCTAAATGGTGTTCAG
CGGGCAGTCGATCTGTGTGCTGCTCCTGGCAGCTGGTCCCAGGTGCTCTC
TCGGAAACTCTACGATACCTGCGAAACGGACGATGAAAAGTCCGCTGTTA
AGATCATAGCCGTTGATCTGCAGGCCATGGCCCCGATCCGTGGAATACTC
CAGCTCCAGGGAGATATCACAAAGCAGTCGACCGCCGAAGCAATCATCGG
TCACTTTGGTGGAAATGAAAAAGCCCAGCTGGTGGTCTGCGATGGAGCCC
CCGATGTCACCGGGGTCCATGAAATGGACGAGTACATGCAGCACCAGTTA
CTTGTGGCTGCTCTCAGCATTGCCACCTGTGTGCTGGAAACTGGCGGAAC
TTTTGTGGCCAAGATTTTTAAGGGAAATGCCACATCGCTATTGAGCTCCC
AGATGCAGATATTTTTCAAAAAATTCGACATCTACAAGCCACCGAGTTCG
CGTCCTTCGAGCATTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCC
CGAGGGCTACATTCCTCAAGTGATTAACCCTGCTCGCGATGATATACGGC
TACTGGCACAGAAAACAGGGTCGGAAGTAAACCGTCGTCTAGTTCCTTTT
ATAGCCTGTGGAGACTTAAATGGGTTGAGTGATCCCGAAGAGGGCAAGAC
TTCCTCCTCAGATGAATCCAAATCAAATTTAGAGTATGTTTACGATGCTG
TTATGGACGACGCATCTTATCCCCTGGAATTTAAAGAGATTCTAAAGCAA
GTCTATGATGAACAACGCCATATATCGCAAGCTTTCTAGACCAT
FMO01654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5220-RA | 1102 | CG5220-RA | 166..1067 | 22..923 | 4510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17041022..17041705 | 142..825 | 3420 | 100 | Plus |
| 3R | 32079331 | 3R | 17040847..17040969 | 22..144 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 17041763..17041860 | 826..923 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:28 has no hits.
FMO01654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:59 Download gff for
FMO01654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5220-RA | 164..1078 | 22..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:22 Download gff for
FMO01654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5220-RA | 166..1080 | 22..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:49 Download gff for
FMO01654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5220-RA | 166..1080 | 22..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:49 Download gff for
FMO01654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17040847..17040967 | 22..142 | 100 | -> | Plus |
| 3R | 17041023..17041705 | 143..825 | 100 | -> | Plus |
| 3R | 17041763..17041873 | 826..935 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:22 Download gff for
FMO01654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12866569..12866689 | 22..142 | 100 | -> | Plus |
| arm_3R | 12866745..12867427 | 143..825 | 100 | -> | Plus |
| arm_3R | 12867485..12867595 | 826..935 | 95 | | Plus |
