FMO01657.5prime Sequence
1234 bp (1026 high quality bases) assembled on 2008-04-11
> FMO01657.5prime
CAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCTGCGTCATC
GTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCATGCCCAGAG
TCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCTGGAGACGA
GGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCCACGAGCTA
ACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTGCTCTTCAA
GGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTCCATTGGCC
GTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCACGCTGATT
GTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCCATCGATTG
GCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAAGGGAGAGC
AGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACTTCGGCTCC
AAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAGGATCTGCA
GCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCGTGCGCCCG
CGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGTACCTGAAG
CTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAACAATCCGA
TGTTCTGGAGGCCACCGCTCTTACCCAAAAGCTGGCCAGCGGTGTTGTGC
AGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCAGTTGGACG
CCGGACGAGGACTTCGGTATACTGCTTAACGCTTTGCAAGCTTACGAGGA
GACTGCGCAAGCAGAGCCGTTGGTTTATCCTTCCCTGCTGTGTATCATCA
CGGAAAGGGGCCACAAAAGGAGCACTATGTGCGGAGATCGAGAAGCTGCA
TGGCAGAAGGTGTCGGTGATCACGCCCTGGCTAGAGATCGAGGACTACCC
CACTGTTCTGGCCAGCGCGACCTGGGGCGGGTGTCTGCACTGGAGCACCA
GGGGCTCGACTGCCAATGAAGTGGTCGAATGTTTCGGCAGCGGCTGCTGT
CTTCGCCCTACATTTCAGTGCCTGATGAACCTGGTGAACCGGCTAAAAGG
GCTTCGGTTGGCACCTGGTTTACCTGGCCAACCGTAAGAATTGCTCTAAA
ATTTCTCAAAGAATCCCCACCTCCTGGTTGAACT
FMO01657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18012-RA | 1607 | CG18012-RA | 88..1246 | 9..1156 | 5220 | 97.7 | Plus |
| CG18012-RC | 1516 | CG18012-RC | 198..1155 | 210..1156 | 4200 | 97.1 | Plus |
| CG18012-RC | 1516 | CG18012-RC | 88..201 | 9..122 | 570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17810479..17811039 | 569..9 | 2805 | 100 | Minus |
| 3R | 32079331 | 3R | 17809933..17810419 | 1051..568 | 2180 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:40:58 has no hits.
FMO01657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:05 Download gff for
FMO01657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-RA | 89..1218 | 1..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:31 Download gff for
FMO01657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-RA | 83..1212 | 1..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:50 Download gff for
FMO01657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-RA | 83..1212 | 1..1124 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:50 Download gff for
FMO01657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17809923..17810418 | 569..1060 | 98 | <- | Minus |
| 3R | 17810480..17811044 | 1..568 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:31 Download gff for
FMO01657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13635645..13636140 | 569..1060 | 98 | <- | Minus |
| arm_3R | 13636202..13636766 | 1..568 | 99 | | Minus |
