FMO01658.5prime Sequence
1231 bp (1004 high quality bases) assembled on 2008-04-11
> FMO01658.5prime
CAGTCGACATGGAATCGGATACGCTGGACCAGGAGAGTGCCGCGGCTGCT
CTAAAAAAACTATCGCCAAGTGAAAGTCCCGAAAGTTCGAAGAAATGGGA
GCCGACTTCGGGAGAGTGGGTTGCGGCGGGTGGGGGAGAAGAGGCGCCGC
CAACAAAGAGACAAAAGACTGCAGACGAAAAGGAGGAGAATCGGGAGGAA
GACGAGGATAGCGAGGAGAGCGTTGATGAGGAGGAGGATGATGGCGAGGG
CATCGTCCAGATTGGCGGCACCATCAGCCCAAGGCATTTCCAGCGCATCC
CCGTCTTTATCGTCGACTACCACAACGATGTGCTGGAGTTCATCTACCGC
TGCTTTGCCACCCGCCACCTTCCGCTGCAGAACAACACCCTTGTCCACTT
CGACTCGCATCCGGATCTGGTCATTCCACGGCACATTGCCGCCAGTTCCA
CCTACCAAAAGGAAACCATGTTAAATGAGCTTAGCATCGAGAACTGGATC
ATGCCCACACTTTATGCAGGACATTTCAACCGCGTCGTGTGGCTGAAGAA
CTCATGGTGCCAGCAGCTGCCCACTGGCAGGCACGACTTTAAGGTTGGAC
AAAAGGACGATCGCATTGGAGTGGACTGTCCGTTGGACTACTTTATTGCC
GACGGCAACTACTGCACTACGGAGGATCTGCAGGATGCCAAGAGCGTGGA
GCTGCAGGTTCACGATGCAGACAACGAAAGCCTCAATCCGAACGAATTCC
TAACGGAGAAGGACGCCAAGGGATTCGTGCTGGACATAGACCTCGACTTT
TTCAGCACCTCCACCCCTTCTTGGAAATATACAAGGATGCCGATTGCTAC
AATCAGCTAAAGGAGATCTTCCACTTTCGAAAGCGTGGAGAAGGTGAAGA
AGTCGGGCACGGCTACTATAGCAGATTATTTGGCCACGGCAGAGAGGCGA
CAGACTCAGTTGGATGCACTGAGACGATTTTCTGGCATCTGGGAGGAGGA
ACGCATTTCGAGGGACTGGAAAAGCCGGACAGAACCGTGCTCCGCCCGAA
ATGGTACCCAGATTGGGAAACTGGGCCGATCACTGCGGGAAAAATATCAG
ACGATGAATCGCACGGGCATGGATCTTCATCGGCACCACACACGGATTAA
TGCCTGCCTCAACTACATTCCGTAAGCAGGTGGTAACAGCGTACTCAGTT
GTCAACTTCAGAGCGGTTTCTTCTACTCGAG
FMO01658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESR6-RA | 1749 | CG6818-RA | 141..1265 | 9..1128 | 5110 | 97.8 | Plus |
| MESR6-RB | 1791 | CG6818-RB | 693..1307 | 519..1128 | 2560 | 96 | Plus |
| MESR6-RB | 1791 | CG6818-RB | 141..651 | 9..519 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19092810..19093321 | 9..520 | 2560 | 100 | Plus |
| 3L | 28110227 | 3L | 19093661..19094174 | 518..1030 | 2315 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:04 has no hits.
FMO01658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:43 Download gff for
FMO01658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6818-RA | 131..1185 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:23 Download gff for
FMO01658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-RA | 133..1187 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:58 Download gff for
FMO01658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-RA | 133..1187 | 1..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:58 Download gff for
FMO01658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19092802..19093320 | 1..519 | 99 | -> | Plus |
| 3L | 19093663..19094174 | 520..1030 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:23 Download gff for
FMO01658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19085902..19086420 | 1..519 | 99 | -> | Plus |
| arm_3L | 19086763..19087274 | 520..1030 | 98 | == | Plus |
