FMO01659.5prime Sequence
1247 bp (979 high quality bases) assembled on 2008-04-11
> FMO01659.5prime
CAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGTACAAGGGG
GAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCTCTGTGCCT
CCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTCCAATCCGC
TGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCAACCAGAAG
TTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAGGGTTACCC
GATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCACCGCCTACG
CCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACTTCCTGTTT
GGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTACGCCAAGCG
CACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCAAAGGGAAG
CCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACGACAAGTTG
GACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAAGTGGTGAA
CCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGGCGACACCT
ACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCATCTTTAAG
ATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGCTGCCAAAA
CCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCGCATCGAGG
GATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGGAGGCCAGT
CTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGCTGAACACCAAAAT
AGTAGCCGGCGTGGAGCCGTCTTTGGCCATGGAGCGTTTGCGGCATGGCG
TGGATTTACAACCAGCTAACGACACGCTCTTCGACGACTACGATGGCATA
GATTACGAGATGACGAGATGGAGAAGGGCCTAAACGCAAGCTTTCCTAGA
CCATTCGTTGGGCGCGCCGGGCCCAGGTAAGTGTCATAAACCATTATCAA
TATCATATCTAATCACAACTAAGCCTAAGAGAATCCTGTCTGAACTAGTG
CTGGGATTCTCACCACATAAAAACGTCCGTGGCACCGGAGCGTCTGAATA
CATTTCCAATGGAATCTTGAAGTCACAACGATATCCTTACCAGCGAATCC
CATAGCGAAGCTTCTAAATTCACTTTTGAGCCCTCACGCACCTGACG
FMO01659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9393-RA | 1479 | CG9393-RA | 152..1129 | 9..982 | 4730 | 99.3 | Plus |
| CG9393-RB | 1589 | CG9393-RB | 152..1060 | 9..915 | 4450 | 99.6 | Plus |
| CG9393-RB | 1589 | CG9393-RB | 1168..1239 | 913..982 | 295 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9562175..9562570 | 915..522 | 1805 | 98.2 | Minus |
| 3R | 32079331 | 3R | 9562817..9563097 | 521..241 | 1405 | 100 | Minus |
| 3R | 32079331 | 3R | 9563189..9563337 | 243..95 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 9563436..9563522 | 95..9 | 435 | 100 | Minus |
| 3R | 32079331 | 3R | 9561933..9562004 | 982..913 | 245 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:31 has no hits.
FMO01659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:45 Download gff for
FMO01659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9393-RA | 145..1132 | 1..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:16 Download gff for
FMO01659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9393-RA | 148..1135 | 1..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:41 Download gff for
FMO01659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9393-RA | 148..1135 | 1..989 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:41 Download gff for
FMO01659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9561927..9562001 | 916..989 | 92 | <- | Minus |
| 3R | 9562175..9562570 | 522..915 | 98 | <- | Minus |
| 3R | 9562817..9563095 | 243..521 | 100 | <- | Minus |
| 3R | 9563190..9563336 | 96..242 | 100 | <- | Minus |
| 3R | 9563436..9563526 | 1..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:16 Download gff for
FMO01659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5387649..5387723 | 916..989 | 92 | <- | Minus |
| arm_3R | 5387897..5388292 | 522..915 | 98 | <- | Minus |
| arm_3R | 5388539..5388817 | 243..521 | 100 | <- | Minus |
| arm_3R | 5388912..5389058 | 96..242 | 100 | <- | Minus |
| arm_3R | 5389158..5389248 | 1..95 | 95 | | Minus |
