FMO01661.5prime Sequence
1205 bp (1033 high quality bases) assembled on 2008-04-11
> FMO01661.5prime
CAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTGGCTGCGGC
TTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAACTGGCGCA
GGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATGGCTAAACG
AGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCTGCAGCGCG
AACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCACACCCCAC
CACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGAGACGCGTG
CCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGCTCAGTTTG
AACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATACGTGGAACT
CAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAAAGAGGACT
GCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCAAGGTGGAG
AAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTCCGTTTGCC
CGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCGCATTATAA
TCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGCTGTGGAAC
GATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGCGCTGCCGT
TTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTACAACATCT
GCGATGATTCAGCATCGACGCAGGGCACCATTAGTAATCTTTTAGTGGAT
ATTTTCGACATCAATTTGGATTTCTTCGGCCTTGAATGTCGAATTTGGGC
AAAACCTTTATCCCACGGACACCGTCAGTGAATCACGACAGCACATGGCA
CCCTGGGCCGAGATTTGCCAGCGCATGGCATCGACAACACCCCGCTGACC
CCGTACCTAGATGAGGAGCAGCTCCAGCACCAGCCACCTTCTACTTGATA
ACCCGAAACTGAAAGACTTTGGGCTACGTGCCTGCAGCATCCGAAAGTCA
CTCGGCGAGCTGCTCATGGAGATGATAACGACTATGTTGAAGCGCAATGG
TTTCCGATCGTGGATCTGGCAGCCTTCTAGACACATTCCGTGGCGCCGCG
GCCAGTATGTCCTAATCTAATCTATGCTCTATCCCATATCACACACCTGT
GACGT
FMO01661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5854-RA | 1562 | CG5854-RA | 115..1214 | 8..1107 | 5080 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23934563..23934932 | 216..585 | 1850 | 100 | Plus |
| 3R | 32079331 | 3R | 23935029..23935292 | 586..848 | 1270 | 99.6 | Plus |
| 3R | 32079331 | 3R | 23934170..23934344 | 42..216 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 23935364..23935616 | 856..1107 | 615 | 90.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:43 has no hits.
FMO01661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:13 Download gff for
FMO01661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5854-RA | 106..1224 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:07 Download gff for
FMO01661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5854-RA | 109..1227 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:44 Download gff for
FMO01661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5854-RA | 109..1227 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:44 Download gff for
FMO01661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23934171..23934344 | 43..216 | 100 | -> | Plus |
| 3R | 23934564..23934932 | 217..585 | 100 | -> | Plus |
| 3R | 23935029..23935297 | 586..855 | 98 | -> | Plus |
| 3R | 23935364..23935620 | 856..1110 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:07 Download gff for
FMO01661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19759893..19760066 | 43..216 | 100 | -> | Plus |
| arm_3R | 19760286..19760654 | 217..585 | 100 | -> | Plus |
| arm_3R | 19760751..19761019 | 586..855 | 98 | -> | Plus |
| arm_3R | 19761086..19761342 | 856..1110 | 92 | -> | Plus |
