FMO01663.5prime Sequence
1234 bp (992 high quality bases) assembled on 2008-04-11
> FMO01663.5prime
ATAAAACAAAGTTATCAGTCGACATGGAGCCAATGAATCTGGGCAGCCCG
GTCAACAGTCCTGGCTCCAACCAGACCCAGTATCTGCCACCTTTTCTGCT
CGGCGATCCGCAAGGTATAACGCCGCACAAGAACACGCTGTCCCCGAAAA
CCGGGCGCTCTAATATAAGTTTCGCCACCTCGCCCGGCGGCAGCAGTCCG
CACGAGCTCAACCGCTCCGCTCTGAGCACACGCACTCTGTTCGCCGCCCA
AGGAGGCGCCCACACGGCTGTGGGCGCCAACAGCTCAACGACCGCGCACG
GCCAGACGCACAGCCACCACCAGACGGGACCGCCCACCCAGGGACTCTTC
GACTCGCTGCGCGAACAGTCCGTCACCCCGAAGAAGAAGAACCATCTTGG
CATGCTGCAGTTGCAGTCACCGAACCAGAGCTACCAGAGCAGCTATCACA
CGAATGACTCGTTCGCACCCGGGGCGCCCAATGCCATCAATGCCTCGATG
CGAGCACTGTGCTCGCCACTTGGAGCCACTGCCTCGCCAGCTGGAGGCCT
GGGCACATCCGTGACGACGGGCGGCAACTCGCGCCTATCCGACTTTTGGG
TTACCATCTTCGGGTTCCCGCCGGGGGCCGGCTCCATGGTGCTGCAGCAC
TTCACCGTCTGCGGCACCATTGTGGACGTGGTGCATGCCCCGCAGAACGG
CAACTGGATGTATGTGCGCTACTCCTCGCGCATCGAGAGCGACAAGGCGC
TGAACTACAACGAAAAAATCATCGCCGGCAATGTGATGGTGGGCGTGTCG
CGCTGCACGGATAGGTCGGTGATCGATAAGGAGAACATCGGCTCTGTGCC
CAATGCATAGATAGGAGATCCCCCCACCAGCCCCAGTGCGATTTCGATCC
GTTTCCAGCAGTCGTACAGCTGGCCCGCAAAGATAACATCATATCGCCGC
AAATGATTGTGCGCAAAAGAGCTCCGGTCTGATGGACAGGCATGACTTGA
TATATCGGCTGGGCAAGCTTTCTAGACATTCGTTTGGCCGCCGGGCCCAC
GTTAGTGGTCTAATCTTATCATATCTATATCTAATCCCAACTAAGCTAGT
GAGTTCTGGCCTGACTGAGTGCTTGGAATCTCCAAATAAAACGTGGGCGC
GAACCGCAGACGTCTGACCTTCGAAGGATCTAGAGACATATAGTGACCAT
CTGCACGGTAGAACTAGTCGTTAGACGCTGATCT
FMO01663.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6540-RA | 1249 | CG6540-RA | 120..1117 | 19..1012 | 4660 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18648515..18649331 | 174..988 | 3775 | 98 | Plus |
| X | 23542271 | X | 18648301..18648456 | 19..174 | 765 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:41:09 has no hits.
FMO01663.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:14 Download gff for
FMO01663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 108..1112 | 12..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:37 Download gff for
FMO01663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 113..1117 | 12..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:54 Download gff for
FMO01663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 113..1117 | 12..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:54 Download gff for
FMO01663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18648294..18648456 | 12..174 | 97 | -> | Plus |
| X | 18648516..18649357 | 175..1012 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:37 Download gff for
FMO01663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18542327..18542489 | 12..174 | 97 | -> | Plus |
| arm_X | 18542549..18543390 | 175..1012 | 98 | == | Plus |
