FMO01664.5prime Sequence
833 bp (833 high quality bases) assembled on 2008-04-11
> FMO01664.5prime
CAGTCGACATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACGGCGCCCCC
GCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAGGAGTCGGA
GGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGCGCTGAACG
AGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAAGTACAACAAGCTG
CGGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGCATCCCCAA
CTTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGGCATTCTGG
ACGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTGAGGTTGAG
GAGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCATTTCGACGA
GAATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCACCTGAATT
CAGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCAGCACGCCC
ATCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTGACAAAGCC
GTACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTTCTTCGATT
GGTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAGAACTGATA
AAAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTACCTGATAT
CGAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGATGAGGAGG
CATTTGACGACGAGGACGGTGAGGATGGAGAAGGCGAGGAAGAGGAAGAG
GATGAGGATGACAAGGCAAGCTTTCTAGACCAT
FMO01664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Set-RA | 1169 | CG4299-RA | 136..942 | 9..815 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15264604..15264955 | 456..807 | 1760 | 100 | Plus |
| 3R | 32079331 | 3R | 15263687..15263944 | 9..266 | 1290 | 100 | Plus |
| 3R | 32079331 | 3R | 15264352..15264542 | 266..456 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:51 has no hits.
FMO01664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:16 Download gff for
FMO01664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4299-RA | 145..965 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:45 Download gff for
FMO01664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Set-RA | 128..948 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:59 Download gff for
FMO01664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Set-RA | 128..948 | 1..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:59 Download gff for
FMO01664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15264353..15264542 | 267..456 | 100 | -> | Plus |
| 3R | 15263679..15263944 | 1..266 | 98 | -> | Plus |
| 3R | 15264605..15264955 | 457..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:45 Download gff for
FMO01664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11089401..11089666 | 1..266 | 98 | -> | Plus |
| arm_3R | 11090075..11090264 | 267..456 | 100 | -> | Plus |
| arm_3R | 11090327..11090677 | 457..807 | 100 | | Plus |
