FMO01665.5prime Sequence
624 bp (200 high quality bases) assembled on 2008-04-11
> FMO01665.5prime
AAAAACAAAGTTATCAGTCGACATGTTGGCGACCGAGGCCAGACAGATCC
TGAGCCGCGTGGGATCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGC
AATGGCACCGCCCAGCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGA
GCCGCAGATCAAGAAGTTCGAGATCTACCGCTGGAACCCGGACAACGCCG
GCGAGAAGCCGTACATGCAGACCTACGAGGTGGACCTGCGCGAGTGCGGC
CCCATGGTGCTGACGCGCTGATAAAATAAGAAGAGATGGACCCCCCGCTC
CCTTTGGCGCTTTGTCCGAGGGATCTCCGCTCTGGCCATAAACTCGGCGC
CCCAACCTTTTGGGCCGGATCAAAAAAATCACATCACCCCCCCCAATTCC
TTAAAGGGGACCCCCCTGCCCCATTTACGTGGGGGGGGAACCCGGTCCCG
GAATTAAAAATTTTTTAGAAGAAAACCCAAATTCCCCCCCTGGGTGGCAG
AAAAAAAAAAAGGGGCGAAAAAAAGGGAGGGCCCAACCCGGGACCCGCGA
AAAATCCTCCCAATGTGGGGGTCTTAAAAAAGGTTCGGGGGCCCCGGTTC
CCCCCCCGGGGCCCTTGAGGGGGG
FMO01665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SdhB-RA | 1219 | CG3283-RA | 130..575 | 23..452 | 1305 | 88.8 | Plus |
| CG7349-RC | 1949 | CG7349-RC | 815..925 | 207..311 | 210 | 83.9 | Plus |
| CG7349-RA | 1888 | CG7349-RA | 754..864 | 207..311 | 210 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6808087..6808277 | 83..272 | 905 | 99.5 | Plus |
| 2R | 25286936 | 2R | 6807755..6807817 | 23..85 | 300 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:17 has no hits.
FMO01665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:09 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:30 Download gff for
FMO01665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhB-RA | 122..430 | 15..316 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:06 Download gff for
FMO01665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhB-RA | 122..430 | 15..316 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:06 Download gff for
FMO01665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6807747..6807817 | 15..85 | 93 | -> | Plus |
| 2R | 6808090..6808337 | 86..324 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:30 Download gff for
FMO01665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2695252..2695322 | 15..85 | 93 | -> | Plus |
| arm_2R | 2695595..2695842 | 86..324 | 95 | <- | Plus |
