FMO01666.5prime Sequence
1188 bp (1014 high quality bases) assembled on 2008-04-11
> FMO01666.5prime
CAGTCGACATGACTTCGCATCCGGTTTTCATAGACCTGTCCCTGGACGAG
CAGGTGCAAGAGCTGCGCAAGTATTTCAAGAAGCTGGGAGCCGAAATCTC
ATCGGAGAAGTCCAATAAAGGTGTGGAGGATGATTTGCACAAGATCATCG
GCGTCTGCGACGTTTGCTTTAAGGATGGTGAGCCCTCGCAGATTGATGGA
ATTCTAAACAGCATTGTGTCCATCATGATCACGATACCCCTGGATCGCGG
TGAGAACATTGTCCTGGCCTACTGCGAGAAGATGACCAAGGCTCCCAATC
TTCCATTGGGCAAGGTGTGCCTTCAGTCGTTGTGGCGTCTGTTCAACAAC
CTGGACACCGCCTCTCCCTTACGCTACCATGTGTACTACCACCTGGTCCA
GGTGGCCAAGCAGTGCGAACAGGTGCTGGAGGTCTTCTCAGGTGTGGATC
AGCTCAAATCCCAGTTTGCCAACTGCCCACCTTCGTCGGAACAGATGCAG
AAGCTGTACCGCCTGCTGCACGACGTGACCAAGGACACCAACCTGGAGCT
GTCTTCCAAGGTTATGATTGAGCTGCTGGGCACCTACACGGCGGACAATG
CTTGTGTTGCCCGTGAGGATGCCATGAAGTGCATTGTGACTGCCTTGGCC
GACCCCAATACATTCCTGCTGGATCCTCTGCTGTCGCTGAAGCCTGTGCG
CTTTTTGGAAGGCGACCTCATCCACGACCTGCTGTCCATCTTCGTGTCCG
AGAAGCTGCCAGCGTACGTGCAGTTCTACGAGGATCACAGGGAGTTTGTC
AACTCGCAAGGATTGAACCATGAGCAGAACATGAAGAAGATGCGTCTGCT
GACCTTCATGCAGCTGGCCGAGAGCAGCCCGGAGATGACATTCGAAACGC
TTACCAATGAGCTGCAGATCACGAGACGAGTGAGCCCTTCGTCATCGAGT
GCTGAAAACAAGCTGGTACGCGCACGACTAGATCAGCCAATCAAAGTACA
CATCTCATCGACATGCACCGAACCTTTGGAGCACCACATGGGAGCAGCTT
CGCGATTGCTGCAGGCATGGAGAAATCTCAACCAGTGCGCGAGGATCTAA
CGAGGTCTCTCGGGCACTTGAATCTGGTCCGATTCGACTATACGCTAAGC
TTCTTAGAACAATCGTTGGGCGCCGGGCCCCGGTAATG
FMO01666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-RB | 1386 | CG8309-RB | 90..1228 | 8..1127 | 5135 | 97.7 | Plus |
| Tango7-RA | 1590 | CG8309-RA | 294..1432 | 8..1127 | 5135 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14163287..14164137 | 1071..233 | 3700 | 98.1 | Minus |
| 2R | 25286936 | 2R | 14164191..14164372 | 233..52 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 14164485..14164532 | 55..8 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:52 has no hits.
FMO01666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:18 Download gff for
FMO01666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8309-RA | 338..1471 | 8..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:25 Download gff for
FMO01666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 294..1427 | 8..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:47 Download gff for
FMO01666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 294..1427 | 8..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:47 Download gff for
FMO01666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14163229..14164136 | 234..1121 | 97 | <- | Minus |
| 2R | 14164191..14164370 | 54..233 | 100 | <- | Minus |
| 2R | 14164487..14164532 | 8..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:25 Download gff for
FMO01666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10051696..10051875 | 54..233 | 100 | <- | Minus |
| arm_2R | 10050734..10051641 | 234..1121 | 97 | <- | Minus |
| arm_2R | 10051992..10052037 | 8..53 | 100 | | Minus |
