FMO01667.5prime Sequence
1214 bp (1018 high quality bases) assembled on 2008-04-11
> FMO01667.5prime
CAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCCCAGGCAGT
GGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCCCTGCCCTC
TAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGGCTTGGACT
CACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCACCGTTGAG
GAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTCGAGGGCGC
CAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGTGTCGCACA
CCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCGGAGCCACC
TATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCCGTGCTCCT
GGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTATCCATCAGT
TCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGGAGTCCAAG
GTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGATTACACCCT
CTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGGCGTGGTCG
TTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGGGCTCCGAA
CTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATAGCTATTAT
GTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTCGGGGACTC
TGGGTCAGAGCGGTCTGCACGTGTGCTACTACCAGAACGCCAGCGACCAG
CTGCAGATCGGTGCCGAGGTGGAGACCAGTCTGCGGATGCAGAGTCGGTG
GCCACGTTAGCGTATCAGATCGATCTGCCTAAGCGAATCTGGTCTTCAGA
GGCGGAATTGATTCCAACTGGCAAATCTTTGGTGTTTGGAGAGCGTCTGG
CTCATTGCCATTCACACTAGCCCTGACGGACGCATGAACCACGTGAGAAC
ACTTTAGACTCGGCTGCGGCTGATGATCGTCGCAGCTTCTGACATTCGTT
TGGCGCGGCGGGCCAGTAATGACTTAATCTGATCTATCATATCCTATTCC
AACTAGCTAAGAGATCTGTCCATGACCTATGGCCTGATTCCCACAATAAA
AGGCCGGTGCGGCAACTGAAGCGATCTCGAACAATCTCCAATGAGAGCGT
GGAGATGCAGCAAT
FMO01667.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom40-RC | 2395 | CG12157-RC | 418..1452 | 4..1029 | 4905 | 98.8 | Plus |
| Tom40-RB | 1861 | CG12157-RB | 290..1324 | 4..1029 | 4905 | 98.8 | Plus |
| Tom40-RA | 1676 | CG12157-RA | 105..1139 | 4..1029 | 4905 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7738379..7738800 | 483..902 | 1980 | 99.1 | Plus |
| X | 23542271 | X | 7737871..7738135 | 221..485 | 1325 | 100 | Plus |
| X | 23542271 | X | 7737465..7737687 | 4..226 | 1085 | 99.1 | Plus |
| 2R | 25286936 | 2R | 6225929..6226275 | 225..571 | 520 | 76.7 | Plus |
| X | 23542271 | X | 7738899..7739035 | 900..1029 | 335 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:05 has no hits.
FMO01667.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:20 Download gff for
FMO01667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12157-RA | 110..1154 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:44 Download gff for
FMO01667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-RA | 110..1154 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:55 Download gff for
FMO01667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-RA | 102..1146 | 1..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:55 Download gff for
FMO01667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7737462..7737683 | 1..222 | 99 | -> | Plus |
| X | 7737873..7738135 | 223..485 | 100 | -> | Plus |
| X | 7738382..7738799 | 486..901 | 99 | -> | Plus |
| X | 7738901..7739042 | 902..1036 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:44 Download gff for
FMO01667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7631495..7631716 | 1..222 | 99 | -> | Plus |
| arm_X | 7631906..7632168 | 223..485 | 100 | -> | Plus |
| arm_X | 7632415..7632832 | 486..901 | 99 | -> | Plus |
| arm_X | 7632934..7633075 | 902..1036 | 92 | | Plus |
