FMO01668.5prime Sequence
1222 bp (1046 high quality bases) assembled on 2008-04-11
> FMO01668.5prime
CAGTCGACATGGATTCGGCCACTAATCTCCTCGAGCAACAGGGCTCAGCG
GCTGATGTGAGTGGCGGGAGCCATCCCGCCGAGGTGGAGGTAACCACCCA
GGCTCGAGCCACTTTCGGCATGGACGCCGAAGGACATGCTACCGGCGAGG
CGGTGACCACCACCACGGCCACCTTGCGTAGAGAAGGTTCAGACGAGGAT
ATCTTTGAGCAGGTGCAGATGATCCTGCGCAAGCGACGTGGCTGGGGACC
GGAGGACTCGCTTAGCCCCAATGATCTGGACATTCTGGAGTACGACGATG
AGTTGGTCGAGGAGGATGACGCCGGTTGTCCACTCCCCTCGACCCCGGAG
GACACACAGCTTATTGAGGCGGAGATGACGGAAGTGCTGAAGGCCGGAGT
TCTCTCCGATGAAATTGATTTGGGCGCATTGGCACACAATGCCGCCGAGC
AGGCAGAGGAGTTTGTGCGCAAGGTCTGGGAGGCTAGCTGGAAAGTGTGC
CACTACAAAAATCTACCCAAGTGGCTGCAGGATAACGACTTCCTACACCG
CGGCCATCGCCCACCGCTCCCCTCTTTCCGTGCGTGCTTTAAATCAATTT
TCCGCGTGCACACGGAAACGGGCAACATCTGGACACATCTTCTTGGCTGC
ATCGCCTTCATCGGCGTGGCATTATACTTCATCTCGCGTCCCTCGGTTGA
GATCCAGACACAGGAGAAGATCGTTTTTGGCGCCTTCTTTATCGGTGCGA
TTGTGTGCCTAGGATTCTCATTCGCTTTTCACACACTGAGCTGTCATTCT
GTAGAGATGGGAAGACTGTTTTCTAAACTTGACTACTGTGGAATTGCGCT
GCTGATCATGGGTTCCTTTGTGCCTTGGCTGTACTATGGCTTCTACTGTC
ATTACCAGCCAAAGGTGATATACCTATCCGTTGTTAGCATTCTGGGCATC
CTCTCATCGTGTCTCGCTATGGGACAGTTTCGGAGCCGCACTTCGTCCTT
GCGCGCTGCGTATTTTATGAGCTTGGGCTGTCGGTGTGATTCCAGCTTAT
TCACTACAGCATCATGGAGGCCTGGTCAGCCGATGACCGCGGCAAGTCTG
GAATGCTATTCGATGGCTCTCCTCCTTCTATCAGTTCTTGGGGCCACTGC
TGTAAGCCTCCAGTATACGAAGCCTGATTTCCCGGGAAGTGAGACATTTG
AGGGTCACTCTACACCATCGTA
FMO01668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AdipoR-RE | 1869 | CG5315-RE | 228..1356 | 8..1124 | 5120 | 97.9 | Plus |
| AdipoR-RD | 1875 | CG5315-RD | 234..1362 | 8..1124 | 5120 | 97.9 | Plus |
| AdipoR-RA | 2299 | CG5315-RA | 234..1362 | 8..1124 | 5120 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22546708..22547078 | 378..8 | 1840 | 99.7 | Minus |
| 3R | 32079331 | 3R | 22545118..22545472 | 826..472 | 1775 | 100 | Minus |
| 3R | 32079331 | 3R | 22544803..22545059 | 1076..827 | 755 | 93.4 | Minus |
| 3R | 32079331 | 3R | 22545683..22545785 | 475..373 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 152..188 | 845..881 | 113 | 78.4 | Plus |
FMO01668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:21 Download gff for
FMO01668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5315-RA | 225..1329 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:26 Download gff for
FMO01668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5315-RA | 226..1330 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:53 Download gff for
FMO01668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AdipoR-RA | 226..1330 | 1..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:53 Download gff for
FMO01668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22545118..22545470 | 474..826 | 100 | <- | Minus |
| 3R | 22545685..22545783 | 375..473 | 100 | <- | Minus |
| 3R | 22546712..22547082 | 1..374 | 98 | | Minus |
| 3R | 22544809..22545059 | 827..1070 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:26 Download gff for
FMO01668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18370531..18370781 | 827..1070 | 95 | <- | Minus |
| arm_3R | 18370840..18371192 | 474..826 | 100 | <- | Minus |
| arm_3R | 18371407..18371505 | 375..473 | 100 | <- | Minus |
| arm_3R | 18372434..18372804 | 1..374 | 98 | | Minus |
