FMO01669.5prime Sequence
1213 bp (984 high quality bases) assembled on 2008-04-11
> FMO01669.5prime
AAAAACAAAGTTATCAGTCGACATGGCGCGTGCCCAGAGTCTCGCCGGCG
AGGGTGAGAAGGAAAAGGACAACAAGGAGAAGGTCGCCAAAGAGAAGGAC
GGCAAGGCGACCAGCGGCTCCTCGCGCAGGGACCGCGAACGCAAACGCCG
CGGATCGGCGTCCTCCAGCAGCGACTCCAGAAGCAGCACATCGGACAGCA
GCTCTTCGCGGAGCAGTTCCGGGTCATCGCGTTCCAGCTCAAGCAGCTCC
AGCGACTCCTCGAGCTCCTCATCATCGTCGTCCAGCGATTCGGATCGCAG
CGAGAAGAACCGAAGACGTGGCGGCGGCGCTGCTGGCAAAGACAAAGACA
AGGATAAGCCCAGCGCCCGATCACGTTCCCGCTCTCGCACCCGTTCCCCC
AGGCGTGTCTCCAAATCTCCAAGACCGGGCAGCAAGGCGCGAAAAGAGCC
GGAGCGAGATCGCGATCGTCGTAGTCGGTCGAGGGATCGTGCCCGCCGTG
CTGGATCCAACGATAGGGCAGCCGCCGATAGCAATAATGTTAAGCGGGAG
CGTTCTCGCTCAGCCAGTCGTTCACGATCGCCACGCCGTCGTGGTCGCGG
CTCCGTTGAGAGGACGCCGCCACCGAAGCGAAGGGAGCGCTCCCGTTCGC
GGACTCGCTCGCCTTCGCCCAAACAGGTGCGCATTCATGTCGGTCGGCTT
ACCCGCAACGTTACCAAGGACCATGTGTTCGAGATATTTAGCAGCTTTGG
GGATGTGAAGAATGTGGAGTTTCCCGTAGATCGTTTTCATCCTAACTTCG
GACGCGGCGTGCGTTTGTGGAATATGCCACACCGAGGATTGTGAGTCGGC
CATGAAGCATATGGATGGCGGGCAAATAGATGGTCAGGAGATTACGGTAT
CCCCGGTTGTCTAGTAAAAACAGAGGCCGCCATGCGTCGTCCTTCGCCAA
CGATGCGCCGTCGGCAAAACAGCGCTGGCGATCCCCACCCCAGTTCAATA
GTCACAATCGTGAAGAGTTGTGCTGCGCGCGACGTCGTCAGTCACCATAA
GAACGCGTCACCAACGCTTCGCTCCCGCTCCCCATTCGTCGTCGACGCCC
GAAAGCAATAGAGTGACAGTTCTCGGCCAGCTTCAAGAACATGCATGGGC
GCGGACAGGAATGTCCTAACTTAATACGTATGCGATATGTACTATATTGC
AACACATAATGCA
FMO01669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnpS1-RA | 1370 | CG16788-RA | 150..1270 | 23..1125 | 4830 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9552688..9553509 | 184..1001 | 3775 | 98.4 | Plus |
| 3R | 32079331 | 3R | 9552257..9552422 | 21..186 | 815 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:54:51 has no hits.
FMO01669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:23 Download gff for
FMO01669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16788-RA | 131..1261 | 15..1125 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:31 Download gff for
FMO01669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 140..1270 | 15..1125 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:37 Download gff for
FMO01669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnpS1-RA | 140..1270 | 15..1125 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:37 Download gff for
FMO01669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9552257..9552422 | 21..186 | 99 | -> | Plus |
| 3R | 9552691..9553647 | 187..1125 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:31 Download gff for
FMO01669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5377979..5378144 | 21..186 | 99 | -> | Plus |
| arm_3R | 5378413..5379369 | 187..1125 | 96 | == | Plus |
