FMO01672.5prime Sequence
871 bp (871 high quality bases) assembled on 2008-04-11
> FMO01672.5prime
AAAAACAAAGTTATCAGTCGACATGGCTGGCGAAGTTATTGTGGATGCTC
TGCCCTACATAGATCACGGCTATGACGATGTGGGCGTCCGGGAATCGGCT
CTCGCCATGGTGGAGGAGGAATGCCGGCGCTATAGGCCCACAAAAAATTA
CCTTGACCATCTGCCACTGCCCGCCAGCTCGCCCTTTGAGACTCCGCTGA
TGGCCAACGAGTTCGAGCGCATCCAGAACCGCCTGCCCATGGAGACGCTC
TCCATGAAGCGCTACGAACTGCCACCGCCGCCATCGGGCAAATTGTCGGA
GGTGTCCGCCTGGCAGGAGGCCATTGAGAACTCGATGGCCCAGCTGGAGC
ACCAGTGGGTGCGCTCTCTCAACCTGGAGCTAATGCTCGACTACGGCACG
GAGGCATGGAAGTCCTACCTGGAGGTCTTCACCGCCATGCAGGCGAAGGC
GCAGCTCCAGCTGCAGCAGCTGAAGAAGGACATTCAAGATGTCAACTGGC
AGCGCAAGCAGGCGCAAACGCAGGCCGGCGAGCGACTGCGCTCCCTGGAA
GCCCATTGGGTGCTGCTGGTCTCCAAGAACTACGAGATCGAGACGGAGTG
CGTCGAGCTGGAAAAGATCGTCCATGCCGCCCGTCAGCAGCTGCGGAAGA
TTACCCCGCCGCCCAGCGCCAATGACACGGCTCCACGCCGGAATACACGA
AATGGTTTCGACCAAAACGATTTGGCCGAGAGCAACGGCAGTAGCTCCAG
CAATCCAGATCCAAGCCAACCTGGCGATGATGGAACAGATGCCGATGGTG
ACAGCAAGGAGAAGACAAATTCTAAGGACGGAGGAATCTTCCAATGGATC
ACGGCAAGCTTTCTAGACCAT
FMO01672.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 1007 | CG4980-RA | 84..914 | 23..851 | 3970 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27921376..27922132 | 851..97 | 3500 | 98.7 | Minus |
| 3R | 32079331 | 3R | 27922198..27922273 | 98..23 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:48:00 has no hits.
FMO01672.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:11 Download gff for
FMO01672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-RA | 79..909 | 23..851 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:35 Download gff for
FMO01672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..914 | 23..851 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:16 Download gff for
FMO01672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..914 | 23..851 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:16 Download gff for
FMO01672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27921376..27922131 | 98..851 | 98 | <- | Minus |
| 3R | 27922199..27922273 | 23..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:35 Download gff for
FMO01672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23747098..23747853 | 98..851 | 98 | <- | Minus |
| arm_3R | 23747921..23747995 | 23..97 | 100 | | Minus |
