FMO01673.5prime Sequence
1004 bp (1004 high quality bases) assembled on 2008-04-11
> FMO01673.5prime
TATAATACCAAGTTATCAGTCGACATGGTTGGGAAAAACTTCAAGGCTCT
AGCGCACTTCCACCGACTGACCGAGTACATAGTTCAGTGCAAACACTGCG
AGAAGACATTGTCCTCCAAACACACATCCTCCAACTTGACGCGCCACTTA
ATCCGGAACCACAAGCTCTTGGCCCGATCAATTTTTGCCGGCGAGGAGGG
TAAGATGCTGGCGGAGCTGAAGGACGAGCTGGAAGCCTCCGCCTCCGAGG
ACCTGAGCATGGAGCTCGGAGAGGGCGAGACCAAGTCGGCGGTGCGCGGC
ATCATGAACGCGAAGCTCGAACAAGAGCAGATGGAGCGGCACAGCCAGGA
GGAGATGCGCAACAAGGTCATTGGGAAGAACAATAAACTGTGGGCGCACT
TTATCCGCATCTCCGAATTCATGGCCAAATGTATGCACTGCGGCAAGACG
CTCTCCTCGAAGCACTCGTCCTCCAATCTGATGCGACACATTGTGCGTCG
TCACACCAGCCTGGCCAAGACGCTGAATCACTCGCACCAGCACCTCATGA
CACCCAAGAAGGACTCCTACGCCAGCCTGGAGCGTAGGCAGGCGGCTGAT
CCCCTGGAGAAAGTCAACTTTGACGATGTGGACAGCATCATCGAAAAGGT
GGCCGATCACCTTGAAGAAGAGGTCACTTCGATTTCGCTGCAGGAACCCT
TCTACGAGTACGTTGTGGACAACTCGGACTCCGTGGTGGTGGACAGGTGC
GATGAGCCGGAGCCGGCGGAGATGCAGAACATGATTCCGCAGGACAGCGC
CTCGCTGGCGGAGTCCACCACACAGCTGGACGAGAAGCTCAAGGCGGAAA
CGATATACTACACGAGATGGGCCGAGTTGGCCAGGGCCAAGCGGCGGCTC
ATTGATCTGCAGACCAAAAAGCTTCTCCTGGACATGAACGTAGTGGACAA
CGCAAGCTTTCTAGACCATTCGTTTGGCGGCGCGGGCCCAGGGTAAGTGG
TCAT
FMO01673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15514-RA | 1369 | CG15514-RA | 141..1067 | 25..951 | 4590 | 99.8 | Plus |
| CG15514-RB | 1348 | CG15514-RB | 141..1046 | 25..951 | 4265 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29860705..29861354 | 674..25 | 3250 | 100 | Minus |
| 3R | 32079331 | 3R | 29860357..29860637 | 951..671 | 1310 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:14 has no hits.
FMO01673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:25:12 Download gff for
FMO01673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 117..1052 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:08 Download gff for
FMO01673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 136..1071 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:22 Download gff for
FMO01673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 136..1071 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:22 Download gff for
FMO01673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29860353..29860635 | 673..957 | 98 | <- | Minus |
| 3R | 29860707..29861359 | 19..672 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:08 Download gff for
FMO01673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25686075..25686357 | 673..957 | 98 | <- | Minus |
| arm_3R | 25686429..25687081 | 19..672 | 99 | <- | Minus |
