FMO01680.5prime Sequence
1204 bp (1015 high quality bases) assembled on 2008-04-11
> FMO01680.5prime
CAGTCGACATGCTGCGATCGAGGATTTCCTGCGCACTGCCACCCAGGAGA
CTGGTGTCCTACTTCTCGGCGGAATTCAACAAGGTGGCGCACGAGGGACC
GGCTAAATTCGCCGCAGGCAGCAGTCATGCCGTAACGAGTGTGGATTTGG
ATGTGTTCGTCAATCCGGATAACCGTCCCATGGACCTGGTGGACCGGCTG
CTCAAGCTCAGGAAACAGAAGGAGGCCAGTTTGGTGCCGCTGATTCCCAG
TGTCTTGGTCAAGCAATTGCTGGACTCCACCAATCCGCAGGAGACGATAT
CGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACCAGTTCTCT
GGCTGCTTCCTGTTGGACTTCCTGCTGCACAATGGCCACGCGGTGGAATC
TGCCCAGCTGGCCACTATTCTCGTGGACAGAAACTTATGCAACAACGAGT
TGCTGGAGTCCCTGGCCCTACAGTCCTTCTGGTCCTTCGCCAAGGAGTTC
AAGCCCTTCGAGTCCTCTCAAGTTCAACCTCCTGCCAAAAATGTTGAAGT
GGAAAAAGTTCGCGTGAAGTTCATTCGCAATTACCCCGACGACGCCAGCG
AAAATACCGAAGAGAAGAAACTGGGTCGCGCCATGGTTCGATTGGGCTCC
GGCGAAGGGTCCTTGAAAGAGCTGAAGCAGAACGTTGCCCTACTTGGCTA
TGTCCTAACCGGACAAGTGCCCGAGGCCTCCAGCTTTCTGGCCTCGAACT
CAGCTGCCCTGCACAAGGAGACTCTTTTAGCCGCACAGAGCATAGTTGAA
AGCCTCAAGCTGGAGGGATCCGAAGAGCTGCTGAAGTCCCTGCAGAAGCC
GTTGAGAAGAGTAGCAAATCGAATGCCATTCAATCGCTACTGGAGAACAG
CGTCAAAGCCAATGTGCAGAAGTTTGAGCCCAAACTGCTGTCGACTACGC
GAGTCGTATCAGAGTGGGTCAGAGTTTGAGCAGCGGTGCAGCGACACTGG
AATCGCAGAGCGTGGAGGAGCGTATGCAACATCCGGAGATCCCTCACGAC
TGGAGGCGAGCGGCGGACCTGGTGATCTCGGACGGACGACTCGACCTCCG
AATCTACAGAGAAGCTACTATTCCAGCCTTGGGTCCGCATAGAAAGTCAG
GCACTGACCCTCTAGTGCGGCGCAATACCGGCAACGGCGCAGGCTTCTAG
TAGC
FMO01680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4882-RB | 1626 | CG4882-RB | 313..1381 | 9..1064 | 4895 | 98 | Plus |
| CG4882-RA | 1397 | CG4882-RA | 84..1152 | 9..1064 | 4895 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23881107..23881588 | 1024..551 | 1985 | 97.5 | Minus |
| 2R | 25286936 | 2R | 23881720..23882063 | 552..209 | 1720 | 100 | Minus |
| 2R | 25286936 | 2R | 23882114..23882317 | 212..9 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:48 has no hits.
FMO01680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:28 Download gff for
FMO01680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 106..1150 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:01 Download gff for
FMO01680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 75..1119 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:44 Download gff for
FMO01680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 75..1119 | 1..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:44 Download gff for
FMO01680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23881107..23881587 | 552..1024 | 97 | <- | Minus |
| 2R | 23881721..23882060 | 212..551 | 100 | <- | Minus |
| 2R | 23882115..23882326 | 1..211 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:01 Download gff for
FMO01680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19768630..19769110 | 552..1024 | 97 | <- | Minus |
| arm_2R | 19769244..19769583 | 212..551 | 100 | <- | Minus |
| arm_2R | 19769638..19769849 | 1..211 | 98 | | Minus |
