FMO01681.5prime Sequence
1181 bp (1019 high quality bases) assembled on 2008-04-11
> FMO01681.5prime
CAGTCGACATGACGGAGGACGAACAGATTAACCTGCGCAATCAGTTGGCG
AGGGCGATGCCATGGTTTGGCATGGACATCGGCGGAACCCTCACCAAGCT
GGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGATCGCGAGG
CTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACTCGGCGTAC
GGCAAAACCGGACATCGTGATACGCACCTACAGATGGACAATGTCGAGAT
ACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGACCACGGACA
TGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCGAGCTGGTG
ACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAGCAGGATTT
CCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCTGGACACGC
TCATCAAAGGCATTCTCTTCGCCGATCTGCATAATCGCACGGAGTGCTAC
TACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAGCAGTTCAA
TTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATCCGGAGTCT
CCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTTCGGGCACG
AGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTCACCGGCTG
CACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGTGACAATAGGA
AGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTACAACCGCTTT
GGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGATGCATCTCAA
CGACAAACGGGTTTCCGTATCACGCGAGATCTGGCCAACGCCACTCTGGT
CACCATAACGAATATATCGCTCATAGCAGGATGTGCGCGCTGATGAGAGA
TCGATAGGTCGTCTTTGTGGCACTTTCTGCGAGTACCCATTTCATGAGCT
GCTGCGTACGCATGGAGTTCTGTCATGCACATGAGGTCTTTTTCCTGAGC
AGAGGATCTTTGGGCTCTGGGTTGCCTGCTGCAATCACGGCGACTGCACC
GCCCTTAGACGAATGACTTCATTCCACTGAATTCGAATCGCAGCGAGCAC
AGATCTTCTCTACGTGCGGGATGAGCACACG
FMO01681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-RB | 1910 | CG5725-RB | 384..1516 | 8..1107 | 4810 | 96.8 | Plus |
| fbl-RC | 2093 | CG5725-RC | 153..1240 | 53..1107 | 4585 | 96.7 | Plus |
| fbl-RA | 1866 | CG5725-RA | 382..1472 | 50..1107 | 4585 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20389913..20390208 | 231..526 | 1480 | 100 | Plus |
| 3L | 28110227 | 3L | 20388668..20388847 | 54..233 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 20390456..20390634 | 651..829 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 20390268..20390393 | 527..652 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 20390688..20390775 | 828..914 | 390 | 98.9 | Plus |
| 3L | 28110227 | 3L | 20384812..20384858 | 8..54 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:06 has no hits.
FMO01681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:30 Download gff for
FMO01681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5725-RB | 374..1501 | 1..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:39 Download gff for
FMO01681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 376..1503 | 1..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:19 Download gff for
FMO01681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 376..1503 | 1..1096 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:19 Download gff for
FMO01681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20390690..20390825 | 830..957 | 94 | -> | Plus |
| 3L | 20390886..20390914 | 958..984 | 93 | == | Plus |
| 3L | 20388669..20388847 | 55..233 | 100 | -> | Plus |
| 3L | 20389916..20390208 | 234..526 | 100 | -> | Plus |
| 3L | 20390268..20390393 | 527..652 | 100 | -> | Plus |
| 3L | 20390458..20390634 | 653..829 | 100 | -> | Plus |
| 3L | 20384804..20384858 | 1..54 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:39 Download gff for
FMO01681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20381769..20381947 | 55..233 | 100 | -> | Plus |
| arm_3L | 20383558..20383734 | 653..829 | 100 | -> | Plus |
| arm_3L | 20383790..20383925 | 830..957 | 94 | -> | Plus |
| arm_3L | 20383986..20384014 | 958..984 | 93 | == | Plus |
| arm_3L | 20383016..20383308 | 234..526 | 100 | -> | Plus |
| arm_3L | 20377904..20377958 | 1..54 | 92 | -> | Plus |
| arm_3L | 20383368..20383493 | 527..652 | 100 | -> | Plus |
