FMO01683.5prime Sequence
845 bp (845 high quality bases) assembled on 2008-04-11
> FMO01683.5prime
AAAACCAAAGTTATCAGTCGACATGTTGAACAACTACAACCCCCTAGCGC
AGCCCATGTGGCAGAACGGACCCGCTCCCGGCGAGTTCTACAACTTCACG
GGCGGACAGACGCCGGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGG
ACCCTATGGAACCAAGCACAGCACTGCTTCCAGCACCACGGGCACTTCCG
TGCTTGGCATTCGCTATGATTCAGGAGTGATGCTGGCCGCCGACACCCTG
GTGTCTTACGGATCCATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAA
GGTCAACAAGAACATCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCC
AGTCCATCAAGCGCAACATCGACCAGAAGATGATCGAGGACCAGTGCTGC
GACGACAACATCGAGATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCG
TGTGCTCTACAACCGTCGTTCGCGGATGAACCCCCTCTACATTGACGTGG
TTGTCGGCGGCGTGGACAACGAGGGGACTCCGTACCTGGCCAACGTGGAT
CTCCGTGGACGATCCTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCG
CCATTTGGCCGTTCCGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACT
TTACCGCCGTAGAAGCTTCCGAACTGATCCGCACATGCATGGAGGTGCTT
TACTACCGCGATACTCGTAATATTTCCCAATACACTGTGGGGCGTGTGCA
GCGTTCAACGGATGCGGCGTGGAGGGGCCCTTCCAAGTTAACGAAAACTG
GACATTCGTCGAACCATAAAGGGATACGCAAGCTTTCTAGACCAT
FMO01683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta7-RB | 1026 | CG12000-RB | 100..904 | 22..827 | 3915 | 99.3 | Plus |
| Prosbeta7-RA | 1215 | CG12000-RA | 289..1093 | 22..827 | 3915 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5357355..5357860 | 676..171 | 2515 | 99.8 | Minus |
| 3R | 32079331 | 3R | 5357924..5358076 | 174..22 | 735 | 98.7 | Minus |
| 3R | 32079331 | 3R | 5357134..5357284 | 827..676 | 600 | 97.4 | Minus |
Blast to na_te.dros performed 2014-11-28 22:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4427..4500 | 357..426 | 109 | 63.5 | Plus |
FMO01683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:39:50 Download gff for
FMO01683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12000-RB | 98..908 | 22..833 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:51 Download gff for
FMO01683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta7-RA | 289..1099 | 22..833 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:34 Download gff for
FMO01683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta7-RA | 289..1099 | 22..833 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:34 Download gff for
FMO01683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5357924..5358076 | 22..174 | 98 | | Minus |
| 3R | 5357128..5357283 | 677..833 | 95 | <- | Minus |
| 3R | 5357355..5357856 | 175..676 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:51 Download gff for
FMO01683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1182850..1183005 | 677..833 | 95 | <- | Minus |
| arm_3R | 1183077..1183578 | 175..676 | 100 | <- | Minus |
| arm_3R | 1183646..1183798 | 22..174 | 98 | | Minus |
