FMO01684.5prime Sequence
1053 bp (1023 high quality bases) assembled on 2008-04-11
> FMO01684.5prime
CAGTCGACATGGTCAACACCAAGTTCTTAACGTTCAACAATGGAGAGAAG
ATGCCCGTGATTGGCATCGGCACCTGGCAGGCATCTGATGAGGAAATCGA
AACCGCCATCGATGCGGCTTTGGAAGCTGGGTATCGCCACATAGATACGG
CGCCAGTCTACGGCAATGAGAAGGCCATCGGAAGAGTCCTAAAGCGTTGG
CTGGACGCCGGCAAGGTCAAGCGGGAGGAGCTGTTCATTGTGACCAAGGT
GCCACCCGTTTCCAACCGCCCCCACGAAGTTGAGCCAACCATCAAAAAGT
CACTGGAAGATCTGCAACTGGACTATGTGGACTTATATTTGGTGCACACT
CCCTTCACAATTAATATCAACGAGGACGGAAGCTTTAAGCTCGACAAGGA
GGGCCTAATGGAGGTCGACGTTACCACGAACCACGCAGCCATCTGGGTTG
CTATGGAGGCCCTGGTGGAGAAGGGTCTCACCAAGTCCATTGGGGTATCC
AACTTCAGCAAGGATCAGGTGGCCCGTCTGTTGAAGAACTGCAAGATCCG
GCCGGCCAACAACCAGATTGAGCACCACGTTTATTTGCAGCAGCGAGATC
TGGTCGACTTCTGCAAGTCCGAAAACATTACCGTAACTGCCTACTCCCCG
TTGGGATCCAAGGGAATCGCCAAGTTTAATGCTGGAGCGGGCATCGTGAG
AGATCTGCCGGACCTGATGGACATCCCTGAGGTGAAGGAGATTGCCGCAA
GCCATGGCAAGACGCCAGCGCAGGTCCTCCTCCGCTGGATTATCGACACT
GGTGTATCCGCCATTCCCAAGAGCACGAATCCCGCTCGCCTTAACAGAAT
CTGGACGTCTTCGATTTCGAACTGACGGCCGAGGAGGTGGCCAAGTTGTC
TAGCCTGGACCAGAATATTCGAATCTGTGACTTTGCATTCTTCCATGGTG
GTGGAAAGGCATCCTGAGTTTACCTTCAGATCAGTACACGAACGCAAGCT
TTCTAGACCATCGTTTGGCCGCGCGGTCCAGGTAGTGTCATAATCATAAT
CAT
FMO01684.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2767-RA | 1309 | CG2767-RA | 144..1130 | 9..993 | 4840 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8006217..8006783 | 948..383 | 2770 | 99.6 | Minus |
| 3R | 32079331 | 3R | 8007332..8007516 | 261..77 | 925 | 100 | Minus |
| 3R | 32079331 | 3R | 8006837..8006964 | 389..262 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 8007895..8007967 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:10 has no hits.
FMO01684.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:39:52 Download gff for
FMO01684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2767-RA | 144..1142 | 1..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:53 Download gff for
FMO01684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2767-RA | 135..1133 | 1..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:06 Download gff for
FMO01684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2767-RA | 135..1133 | 1..997 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:06 Download gff for
FMO01684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8006837..8006964 | 262..389 | 100 | <- | Minus |
| 3R | 8007332..8007512 | 81..261 | 100 | <- | Minus |
| 3R | 8007896..8007976 | 1..80 | 95 | | Minus |
| 3R | 8006217..8006776 | 390..948 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:53 Download gff for
FMO01684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3831939..3832498 | 390..948 | 99 | <- | Minus |
| arm_3R | 3832559..3832686 | 262..389 | 100 | <- | Minus |
| arm_3R | 3833054..3833234 | 81..261 | 100 | <- | Minus |
| arm_3R | 3833618..3833698 | 1..80 | 95 | | Minus |
