FMO01689.5prime Sequence
1221 bp (1041 high quality bases) assembled on 2008-04-11
> FMO01689.5prime
CAGTCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTCTCCGCCTC
CACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCTGAGCAATC
TCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAAGCAGGGCG
TGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGTCTGCGTCAGGTGCTT
CAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAATCTGCAGTA
CGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTATCACCACA
TCCGAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGATTGAACAG
GTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATTGGTGGTGA
TCATGCGATCGGCTTCGGATCCGTGGCCGGGCACCTGCAACACACGCCGA
ATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATCTGCATAGC
ACCTCGCAGTCGGGCAACATCCATGGGATGCCTGTATCCTTTCTGTTGGA
ACAGCTCCGTAACACCTGGCAGCACGCTGGCCTCCAGGAAATCGCGCCCA
ACTGCTTGCCCAAGGATCAGCTGGTTTACATCGGACTCCGGGACATTGAC
CCCTACGAGGCGTTCATCCTAAACAAAGTCGGAATACGCTACTATGCAAT
GGATACCATCGACCGGGTGGGCGTGCCCAAGATTATCGAGATGACGCTGG
ACGCCCTTAATCCGCAGAACAAGATCCACGTCAGCTTTGACATCGACGCC
TTGGGACAGCAATGTGGCGCCTAGCACTGGCACCGCGGTGCGCGGTGGCC
TCACGCTCCGCGAGGGAATCAGCATCGTGGAGGCACTCCGGGACACCAAG
CGGGTGCAGGCGTCGATCTGGTGGAGATCACCCAAAGCTAGCAGCGAGCG
CGACGTGCGCACCACTGTGAGTCCGCCTGAGATACTGAGAGCATGTTCGG
TTACCGGCGTTCGGCGCTGGAGCAACATCGATACCGGAATCCTTGTAGCG
ATGCAGCTTTCTAGACATTCGTTTGGCGCGGGTCCAGGTAAGGTGTATAT
CATATCAAATCTAATCTATCCCACCTAGCCTAGAGATCCTGGTCTAGACA
TGCTGAATCCACATAAAAGCCCGGGCGACCGAAGCGTTCTGACAAATTCA
CTAGTGTGAGTTCCTGTAGGA
FMO01689.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arg-RA | 1243 | CG18104-RA | 78..1130 | 9..1052 | 5005 | 99 | Plus |
| elav-RD | 10506 | CG4262-RD | 9627..9832 | 418..213 | 1030 | 100 | Minus |
| elav-RD | 10506 | CG4262-RD | 10025..10229 | 213..9 | 1025 | 100 | Minus |
| elav-RD | 10506 | CG4262-RD | 9380..9567 | 604..417 | 940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 527559..527907 | 705..1045 | 1290 | 96.6 | Plus |
| X | 23542271 | X | 509909..510114 | 213..418 | 1030 | 100 | Plus |
| X | 23542271 | X | 509512..509716 | 9..213 | 1025 | 100 | Plus |
| X | 23542271 | X | 510174..510361 | 417..604 | 940 | 100 | Plus |
| X | 23542271 | X | 526501..526601 | 604..704 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:54 has no hits.
FMO01689.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:17 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:46 Download gff for
FMO01689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arg-RA | 87..1147 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:02 Download gff for
FMO01689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arg-RA | 70..1130 | 1..1052 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:02 Download gff for
FMO01689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 509910..510113 | 214..417 | 100 | -> | Plus |
| X | 510175..510361 | 418..604 | 100 | -> | Plus |
| X | 526502..526601 | 605..704 | 100 | -> | Plus |
| X | 509504..509716 | 1..213 | 98 | -> | Plus |
| X | 527559..527907 | 705..1045 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:46 Download gff for
FMO01689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 420535..420634 | 605..704 | 100 | -> | Plus |
| arm_X | 403537..403749 | 1..213 | 98 | -> | Plus |
| arm_X | 403943..404146 | 214..417 | 100 | -> | Plus |
| arm_X | 404208..404394 | 418..604 | 100 | -> | Plus |
| arm_X | 421592..421940 | 705..1045 | 97 | == | Plus |
