FMO01692.5prime Sequence
1213 bp (1021 high quality bases) assembled on 2008-04-11
> FMO01692.5prime
CAGTCGACATGACATCGAATTCCGAAGGTCGAGGCAACCCCATCGAGACG
CATGAACAGGAGCCCATGGACGTGCGCATCGACATGCCGTGGGGTTATGT
GGTGGGCAAGTGGTACGGCAATCGGCAGGTACGACCCATCCTGGCGCTGC
ATGGCTGGCTGGACAACCTGGGCACGTGGGACAAATTGCTGCCCCTGCTA
CCGAAGCACCTGGGAGTGCTGTGCATCGACCTGCCCGGCCACGGATACTC
CTCGAAGCTGCCCGAGGGGATTGCCTACCACTTCGTGGACTACCTGTGCG
TGATCCTGCGCGTAATGGAGGAGTACCGCTGGCAGAAGGTGTCCCTGATG
GCCCACTCAATGAGCGCCATGCTGTGCTTCGTATTCGCTTCGCTGTACCC
ACATCGCACCGACATGTTGGTCAGCATAGATATAGTGAAGACCCGCTATA
GGAAGCCCCCCTCGCAGATCGACTATCTGCGCAAGAACATCGAGGGCTAC
ATTGTGGAGGACGAGCGATTTGCGAATTCCAAGCGCCAGGAGCCGCCGGC
CTATACCTACACAGAGATGGAGCAGGTCCTGTACAAAGGCACCGACTACT
CGGTGGAGCTGGAGAACTGCCGCCACATCCTGGAGCGCAACATCAGCCGT
TCCACCAAGTTCCCGGCCAAGTTCTTCTTCTCGCGCGACGGTCGCTGCAA
GTACTACACGGAGTTCCATACGAGTCCTCCCTTCGCCGCTGAACTGGCCA
GGACCATCAAGAATGTGCCCTACTGCGTGATCAAGGGCTCCGAGTCGAAC
TACATAGACGAGCAGAGCGACGAGGTGATTGGCATCCTCAGGGAGAACAA
CCCGCACTTCGAGCTCCACGAAGTGCAGGCACCCACCACGTTCACCTCAC
AATGCGCAGGGTGTGCGGCCGTCATTATCCCTTCATTCTGCACCACCGCC
CACCGCATCTGGAGACTGGACGGTGGACGGACGGATGAGACGCTGCTCGG
AGGTCGTCAGGATCAGTGGCCGTGAGATTCAGAGAATGTCAGCGGAGAAG
AGAAAGCACCTAGCAGCCTTTCTAGACATCGTTGGCCGCCGGGCCCAGGT
ATGGCTAATCTATTCATACCTAATTCTAATCCCCACACTAGCTAGGATCT
GGCCATGACATTGCTTGAATTCCACAATAAAACGGCGCCGGCGCTACCGA
GCGGCTTCGGACA
FMO01692.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RA | 1533 | CG5707-RA | 232..1292 | 9..1055 | 4905 | 98.4 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 464..1473 | 60..1055 | 4650 | 98.3 | Plus |
| CG5707-RB | 1477 | CG5707-RB | 227..1236 | 60..1055 | 4650 | 98.3 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 232..282 | 9..59 | 255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2189468..2190413 | 996..57 | 4430 | 99.4 | Minus |
| 3L | 28110227 | 3L | 2191939..2191990 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:16 has no hits.
FMO01692.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:45 Download gff for
FMO01692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 191..1261 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:29 Download gff for
FMO01692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..1302 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:33 Download gff for
FMO01692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..1302 | 9..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:33 Download gff for
FMO01692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2189417..2190410 | 60..1041 | 98 | <- | Minus |
| 3L | 2191940..2191990 | 9..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:29 Download gff for
FMO01692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2189417..2190410 | 60..1041 | 98 | <- | Minus |
| arm_3L | 2191940..2191990 | 9..59 | 100 | | Minus |
