FMO01701.5prime Sequence
689 bp (689 high quality bases) assembled on 2008-04-17
> FMO01701.5prime
TAAAAAACAAAGTTATCAGTCGACATGGCGAGATCAGGGCGCAGTTCGAG
GTTTCTTATCGGCGGCAGCACTTGCTGTTCGATGCTTCTGGGTCTTATCT
GTCTGGCTCTGGCGGACTCATCCCAAGTGAAAGAACGCAGCCCTACCATC
TTGGTGAGAAATACAATTCAAGCGGTGGAGAGGCTCTTCAATCAGGTGCT
CTACACGACCATCGAAGATGCCCGCCAACGACTACCGGGTCTTCCGGCCA
ACGAAACCATCGATCGGCAGTACTTCGAGGAGCTCGACCTGGTTGCTGGG
AACGAGGACTATTACAGCACTGCATTCTATATCTTCGCCTGGATAAACAG
CGACCTCATGTACCATAAGACTCCCGATAAGTTGCTCGTCGAGGTTCTTC
CCGGCGAGAAGATCGCCATCCGCAGATTCTTCGCCAAGGTCAAGCCGCAT
CTTACCAAGTATCTGCGACTCAGTCGACAGGACAGGTCGGAATTGGTTTC
CAACGTCACCCAGTTGGCCACCGAAACCAAGGACAGTCTGATCACAACCT
TCTTGGAGTTTCCCCAGAACCTGAAGAGCCAACTTCCTGAGCTCCAGCTA
ATGGACTACACCAAATTGGCTCAGGCTTTGGTGCAGGGGGTGGCCAGTGG
TATATGGACGAAGGCTGCAAGCTTTTCTAGACCATTCGT
FMO01701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-RA | 896 | CG10658-RA | 31..673 | 24..666 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19966950..19967511 | 666..105 | 2810 | 100 | Minus |
| 2L | 23513712 | 2L | 19967573..19967655 | 106..24 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:17 has no hits.
FMO01701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:48 Download gff for
FMO01701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10658-RA | 3..662 | 15..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:53 Download gff for
FMO01701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 17..680 | 11..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:16 Download gff for
FMO01701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 17..680 | 11..674 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:16 Download gff for
FMO01701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19966943..19967510 | 106..674 | 99 | <- | Minus |
| 2L | 19967574..19967669 | 11..105 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:53 Download gff for
FMO01701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19966943..19967510 | 106..674 | 99 | <- | Minus |
| arm_2L | 19967574..19967669 | 11..105 | 94 | | Minus |
