FMO01702.5prime Sequence
774 bp (774 high quality bases) assembled on 2008-04-17
> FMO01702.5prime
TATAAAACGAAGTTATCAGTCGACATGGTGTACACCGGTTACGTAAGCAA
CGGATTGCAGAATGCTGAGGAAACTGCATGGGTGCCGTATGGAGATCCCA
ATGACTGGTCACATGGTCTGGCAGTTTATGATGGTTTGGAACTGATGAGC
GGCAATGAGGAGGAGTTGCAGCCCTCATTGAACCGGGTGATGAAAAACAT
CGACTACGACCTGGCCATGAAGCATCCATTGGAGCATACCTGGACTTTGT
GGCACTTGGAGAACGATCGTACCAAGCGCTGGGCCGAAATGCTCGTCGAT
GTGACCAGCTTCAACACCGTTGAGGACTTCTTCAGTGTGTACTACTTTGT
GAAGCCGCCATCGGATCTGAAGATATTCAATGACTACATGGTCTTCAAGA
AAAATATTCGTCCCATGTGGGAGGATGACACCAATAAGAACGGTGGTCGT
TGGATACTGCTCCTGGACAAGGCCTCCAGGACCTATATAGATAAGATGTG
GCACGATTTGCTTTTGTGCATGATTGGCGAGTGCTTCCAGCACTCGGACG
AGATATGTGGAGTGGTCATCAATGTGCGCAACAAGGCTAATAAGCTATCC
CTTTGTACGAAGGACTCTCGCAATGTAGAGGCTATCCTGTCCATTGGCAG
GCAGATAAAGGAGCTGCTGCATCTGGGCATTATGGAAATCCAGTACCAGG
TGCACAAGGATGCCATGGTGAACCATGGACCCAATGTCAATGCCATCTAC
ACATTGGCAAGCTTTCTAGACCAT
FMO01702.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF4E-3-RA | 1040 | CG8023-RA | 159..890 | 25..756 | 3645 | 99.9 | Plus |
| eIF-4E-RI | 1793 | CG4035-RI | 1019..1324 | 240..545 | 210 | 72.1 | Plus |
| eIF-4E-RH | 1492 | CG4035-RH | 718..1023 | 240..545 | 210 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8229498..8229757 | 76..335 | 1300 | 100 | Plus |
| 3L | 28110227 | 3L | 8230261..8230418 | 599..756 | 775 | 99.4 | Plus |
| 3L | 28110227 | 3L | 8229952..8230052 | 410..510 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 8230115..8230203 | 510..598 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 8229821..8229898 | 333..410 | 390 | 100 | Plus |
| 3L | 28110227 | 3L | 8229382..8229433 | 25..76 | 260 | 100 | Plus |
| 3L | 28110227 | 3L | 7895198..7895260 | 220..282 | 180 | 85.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:16 has no hits.
FMO01702.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:50 Download gff for
FMO01702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8023-RA | 150..886 | 25..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:26 Download gff for
FMO01702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4E-3-RA | 159..895 | 25..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:45 Download gff for
FMO01702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4E-3-RA | 159..895 | 25..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:45 Download gff for
FMO01702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8229382..8229433 | 25..76 | 100 | -> | Plus |
| 3L | 8229499..8229757 | 77..335 | 100 | -> | Plus |
| 3L | 8229824..8229898 | 336..410 | 100 | -> | Plus |
| 3L | 8229953..8230052 | 411..510 | 100 | -> | Plus |
| 3L | 8230116..8230203 | 511..598 | 100 | -> | Plus |
| 3L | 8230261..8230423 | 599..762 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:26 Download gff for
FMO01702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8222482..8222533 | 25..76 | 100 | -> | Plus |
| arm_3L | 8222599..8222857 | 77..335 | 100 | -> | Plus |
| arm_3L | 8222924..8222998 | 336..410 | 100 | -> | Plus |
| arm_3L | 8223053..8223152 | 411..510 | 100 | -> | Plus |
| arm_3L | 8223216..8223303 | 511..598 | 100 | -> | Plus |
| arm_3L | 8223361..8223523 | 599..762 | 97 | | Plus |
