FMO01703.5prime Sequence
1244 bp (1060 high quality bases) assembled on 2008-04-17
> FMO01703.5prime
ATAAAACGAAGTTATCAGTCGACATGGCGAGTGGCATTAACCAAGCAGCA
GGTAAACTGCCGGCAATTGCGAAGAAGGTGCAAAATCTCGGCGATATGGG
CGTTTGGCAAAAATCCCGCGCCTTCCACGATTTAATTGGATATATAAATG
GCACCAGTTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAG
TCGGAAATGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATT
GGTAGAGCAAAATCCTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAG
CCTACAGGGATTGGGCGCAGGCAATGCGGGAATTGTTGCCCGAACTCCTA
GAACAGCTGTTGCCAGACGACAAGAAGCGATACCAGGTGGAGCTGGGGCA
GTATCTCACTGAATCTTTCGGCAATGCCACCAGGATCGACTACGGCACCG
GCCACGAGCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAG
ATCCTGCAGGAAAGGGACATCGTGAGTGCTGCGCTGAGACTCTTCAATCG
GTACCTTGAGCTCGCCAGGCAGCTGCAGCGAACATACAACATGGAACCCG
CTGGGAGCCAAGGAGTCTGGTCGCTGGACGATTTCCAGTTCGTGCCCTTC
ATCTGGGGCAGTGCACAGCTGGCGGTTAAGAGTCCCTTTGATCCCTCGAA
GTTCGTGGACGAGGCGATAATCACCGAGTACAAGGATCACTTCATGTTCA
TCAGTTGCATCGACTACATCTGCAAGGTCAAGACTGGACACTTTGGCGAG
CACTCTAACCAGCTGTGGAGCATCACGGATGTGCCAACATGGGCCAAGAT
CAACGCGGGACTAGTTAAGATGTACCAAAAGGAGATTCTCTCCAAGTTTC
CCGTGATCCAGCACGTCTACTTCGGAGACTGATGACATTCGAGCCCGTCT
CTCTGGCACAACTCTGTCAACGCACGACTGGGTCATGTGCTCGCGCATCC
AAACGCATCTGCATCGGACTCCAAACTTGGTGCCACAGTTCTGTTGCCAC
TGCTCCTCTCCGCCGCCGATCTCTTAGCATCGACGATGGGGGCGACTCGA
GGCAGTGGAGAGGCAGCGACAACAGCGGGACCTACGTTCATCCAATCCGG
TGCTTTTCTTGGTGGCGGCGCCTAGGATCTGGTAAGCCAAAAGGAGAGAC
GTGATAGCCTTCTCTTAGAACACATTCGTTGTGTGCGCGGCGGG
FMO01703.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptpa-RA | 1393 | CG3289-RA | 98..1272 | 24..1182 | 5140 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3377178..3377809 | 48..679 | 3145 | 99.8 | Plus |
| 2L | 23513712 | 2L | 3377861..3378070 | 675..884 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 3378154..3378339 | 883..1058 | 475 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:35 has no hits.
FMO01703.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:53 Download gff for
FMO01703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3289-RA | 92..1230 | 24..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:30 Download gff for
FMO01703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpa-RA | 98..1236 | 24..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:46 Download gff for
FMO01703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpa-RA | 98..1236 | 24..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:46 Download gff for
FMO01703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3377099..3377126 | 24..51 | 100 | -> | Plus |
| 2L | 3377182..3377805 | 52..675 | 100 | -> | Plus |
| 2L | 3377862..3378070 | 676..884 | 100 | -> | Plus |
| 2L | 3378156..3378433 | 885..1147 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:30 Download gff for
FMO01703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3377099..3377126 | 24..51 | 100 | -> | Plus |
| arm_2L | 3377182..3377805 | 52..675 | 100 | -> | Plus |
| arm_2L | 3377862..3378070 | 676..884 | 100 | -> | Plus |
| arm_2L | 3378156..3378433 | 885..1147 | 91 | | Plus |
