FMO01705.5prime Sequence
1242 bp (1018 high quality bases) assembled on 2008-04-17
> FMO01705.5prime
AAAATACAAAGTTATCAGTCGACATGTATTACTTGTGCATTTTCCTGTGG
GTCACTTCAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTC
CAAGAGCCATACAAACCAGAACCTCGTCGTCTCGCCCGTCTCCATAGAGA
CCATCCTTAGCATGGTCTTCATGGGCGCAGAAGGCTCGACGGCCAAGGAG
CTGCAGAGCGCCTTAGGTTTACCATCGGAGGACAAAGAGGCGGTGGCAGC
CAGGTACGGTGCTCTCCTCAACGATCTTCAGGGACAGGAGGAGGGACCCA
TACTAAAGCTCGCGAATCGCATCTACGTCAACGACCAGTACAGCCTGAAT
CAGAACTACAACCTCGCTGTGAGGGAACCCTTCAAGTCCGAGGCGGAGTC
CATTAGTCTGACCAATGGCCCTGTGGCGGCCGAGAGAATCAACCAGTGGG
TGCTGGATCAGACCAGTGGTAAAATCAAGGGCATGATCGATCCCGGCAGC
ATGACGTCCGACGTGAAGGCCTTGCTGGTGAACGCCATCTACTTTAAGGG
CCAGTGGGAGTCGAAGTTTGACCCAGCTAAGACCAGAGCCTCCACCTTCC
AAGTAACTGCGAACAAGAGTGTGCCCGTCCAGATGATGGCGCAAATGGGA
ACATTCAGGGCTAACTACTTCCGCGATCTAGATGCCCAAGTCATCGAGCT
GCCGTACCTTAACTCCAACCTGTCCATGACTATCTTTCTGCCCCGAGAAG
TGGAGGGCTTGAGCGCCCTGGAAGAGAAGATCGTTGGCTTCGCCAGGCCG
CTGGTTGCCAAGGAGGTCTATCTTAAGCTGCCCAAGTTTAAAATCGAATT
TCGTGATGAACTCAAAGAGACCTTAGAGAAGCTGGGCATCCGAGAGCTAT
TCACCGACAAGTCAGACTTAAGCGGCTTGTTCGCCGATAAGTCAGCGGCA
AAGTCAGTCATGTCTCGCACAAGGCGTTTCTGGAGGTGACGAGAGGGAGC
GGAGCCGCAGTGCCACATCTGTGACGTCACAAATCGAGCGGGATTTTTTA
CGTTCCTCATGACGATCATCCCTTGGCTTCGTCATTCCCGATGCGAAACC
AATTAATTTCCAGGGCGGGTTGTTAGCCCTGCAAGCTTTCTAGAACAATT
CGTTGGGGCGCGGGGCAGTAGTTACTATCTAAATCAATCTAACCAAATCA
CACTGGCCTATGAGGAACTCCTGTCATTGAACTATGGGGCCT
FMO01705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Dd-RB | 1195 | CG9456-RB | 51..1166 | 24..1130 | 5160 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6883614..6884458 | 37..881 | 4225 | 100 | Plus |
| 2R | 25286936 | 2R | 6884514..6884625 | 879..989 | 495 | 98.2 | Plus |
| 2R | 25286936 | 2R | 6884736..6884828 | 1025..1115 | 230 | 88.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:56 has no hits.
FMO01705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:56 Download gff for
FMO01705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9456-RA | 323..1427 | 18..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:59 Download gff for
FMO01705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Dd-RB | 46..1150 | 18..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:22 Download gff for
FMO01705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Dd-RB | 46..1150 | 18..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:22 Download gff for
FMO01705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6883614..6884458 | 37..881 | 100 | -> | Plus |
| 2R | 6884517..6884658 | 882..1018 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:59 Download gff for
FMO01705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2771119..2771963 | 37..881 | 100 | -> | Plus |
| arm_2R | 2772022..2772163 | 882..1018 | 95 | -> | Plus |
