FMO01706.5prime Sequence
389 bp (389 high quality bases) assembled on 2008-04-17
> FMO01706.5prime
ATAAAACAAAGTTATCAGTCGACATGAAGCCGAAGAAATCGGCCTTTGCC
AATTCATCCACGGGATACGGCAGGAACAAGCACGGTAAAGGACACTCTGG
CAAGGATAAAGTCGAGGGTGGTGGTAAGGGCAAGAGCCGAGACGAGAAGG
ATAAGCATAAGCATGAGCAGAAGGTGGACGAGAAGGATGACAAGGATCTA
AATTCCGGCTTCGGCGACTATCTTCGCACTCCGGAGGCATTTGAAATGAT
GAAACTCTTTGTCTTCGCCAATACCATAATGCTAATTGTCACCATGGCCT
GGCCGCACATCAAGGAGCAATTCTACATGGTTAATCAATGGCTTGAAAGC
TTCCGCGAGGAGCATCAGCAGGCAAGCTTTCTAGACCAT
FMO01706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42508-RA | 949 | CG42508-RA | 119..466 | 24..371 | 1740 | 100 | Plus |
| Xport-RA | 949 | CG4468-RA | 119..466 | 24..371 | 1740 | 100 | Plus |
| CG42508-RB | 1029 | CG42508-RB | 119..470 | 24..371 | 1690 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19915081..19915294 | 237..24 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 19914879..19915013 | 371..237 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:05 has no hits.
FMO01706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:58 Download gff for
FMO01706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-RA | 116..463 | 24..371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:54 Download gff for
FMO01706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 116..463 | 24..371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:19 Download gff for
FMO01706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 119..466 | 24..371 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:19 Download gff for
FMO01706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19914879..19915012 | 238..371 | 100 | <- | Minus |
| 3R | 19915081..19915294 | 24..237 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:54 Download gff for
FMO01706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15740601..15740734 | 238..371 | 100 | <- | Minus |
| arm_3R | 15740803..15741016 | 24..237 | 100 | | Minus |
