FMO01708.5prime Sequence
1219 bp (997 high quality bases) assembled on 2008-04-17
> FMO01708.5prime
AATATACAAAGTTATCAGTCGACATGTTTCGTCGTGGAAAACTATCCTTT
CTAAACACCAAAGATGACCGTGTTAAAATAATAAACGAGCGCATAAACAT
AACAGAAAGGCATCTAATGGAGATGTGCTCTTCGTTTGCTTTGGTAACGC
GGAAAATGGCCAAATATCGGGACTCCTTTGATGAGTTGGCCAAGAGTGTG
AAGAGCTACGCCGACGACGAGGAAATCAACGAGAGTCTCTGTCAGGGACT
GAAGAGCTTCACCAACGCGGTTACCATAATGGGTGATTACATGGACATCA
ATGTACACCGATTGGAACACAAGATTGTCAACGAGTTGGCGCAATTCGAG
CAGCTTTGCAAGTCCACAAGGGACAATCTTCGACTGGCTGTCATAGCGCG
GGATAAGGAGGTACTACGTCAGCGCCAGATGCTTGAGCTCAAGTCAAAGT
TTTCTGCGAACAATAGTGCCGCCGATTCGGAGCTGTTTAAGGCCAAAATG
GAGGTGCAGCGCACAAACAAGGAGATAGACGACATTATTGGCAACTTCGA
GCAGCGGAAGTTGCGCGACTTAAAGCAGATAATCAGCGATTTTATACTGA
TCGCCATGAAACAGCACACCAAGGCATTGGAGATACTCAGCGCAAGCTAC
TATGATATTGGAACCATTGATGAGCGCGACGATTTCATTGAGTTTCAGAA
ACTCATGAAGACCAAAGAAGAGCTGGCTTCCAGGAAAACTGCACTCAAAA
AGGGACTGCGCTCCCAGTCGATGGATAGCTTGGAGCACGAGCACCTGGTC
AGTCCGCTCAAGAGGCGCCCGAAGTTGTCCAGGAGCAATAGGAATCTGAC
GGGAGCCGGAATCAATCATGGAAGTAAAACAGAACTCGAAGATGAAACCG
ACGAGCAGGATGAGAGGATGATGATGAGGATGAGGAAACCGAGCAAAGGG
CGAAGAGGACGAGGATCTGGACCGGCACGGATGACGAGAGGAACCACGCA
GCCGGCAACCAGGTTCCTCCGCGGGAGAATGTTTTTGGGCAAAATCCGAT
CTGCAGCAGGATTATAGCAACGCATCGACCAGTGCAATGTCACTTCTGCT
CCTCGAGCAGCAGACAAACGGGTCAACATCATTCAAGGCGGTGCTCCAAC
CTAGTAGCTGCAACATCAGTGCCAGAAGCTAGACTTCTGAACAATGTTTG
GGCGCGGGGCCAGTATTCA
FMO01708.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6405-RA | 1326 | CG6405-RA | 35..1171 | 24..1143 | 5070 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12425539..12426010 | 465..935 | 2265 | 99.2 | Plus |
| 2L | 23513712 | 2L | 12425129..12425288 | 164..323 | 800 | 100 | Plus |
| 2L | 23513712 | 2L | 12425341..12425483 | 322..464 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 12424938..12425077 | 24..163 | 700 | 100 | Plus |
| 2L | 23513712 | 2L | 12426059..12426240 | 933..1103 | 295 | 89 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:46 has no hits.
FMO01708.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:03 Download gff for
FMO01708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6405-RA | 35..1186 | 24..1156 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:42 Download gff for
FMO01708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6405-RA | 35..1186 | 24..1156 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:56 Download gff for
FMO01708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6405-RA | 35..1186 | 24..1156 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:56 Download gff for
FMO01708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12425539..12426009 | 465..934 | 99 | -> | Plus |
| 2L | 12424934..12425077 | 18..163 | 96 | -> | Plus |
| 2L | 12425129..12425288 | 164..323 | 100 | -> | Plus |
| 2L | 12425343..12425483 | 324..464 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:42 Download gff for
FMO01708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12424934..12425077 | 18..163 | 96 | -> | Plus |
| arm_2L | 12425129..12425288 | 164..323 | 100 | -> | Plus |
| arm_2L | 12425343..12425483 | 324..464 | 100 | -> | Plus |
| arm_2L | 12425539..12426009 | 465..934 | 99 | -> | Plus |
