FMO01710.5prime Sequence
690 bp (690 high quality bases) assembled on 2008-04-17
> FMO01710.5prime
AAAAAACAAAGTTATCAGTCGACATGGCTGCGCCGGTCATTGTCGAGGCC
ACGGTCAAGCAAACCGCCACGCTGATCTTCATGCACGGCCTGGGTGATAC
GGGTCATGGCTGGAGCAGTGCCCTAGCCGCCATCCGCCCACCTTTCATGA
AAGTCATCTGCCCCACGGCGCCCACACAGCCCGTTTCGCTGAACGCCGGC
TTCCGCATGCCGTCGTGGTTTGACCTGAAGACGCTGGACATCGGTGGGCC
CGAGGACGAGCCGGGCATCCAGTCGGCGCGTGATAGTGTGCACGGTATGA
TCCAGAAGGAGATTAGCGCTGGGATTCCGGCCAATCGCATTGTCCTGGGC
GGATTCTCGCAGGGCGGAGCCTTGGCACTGTACTCGGCACTCACGTACGA
TCAGCCGCTGGCCGGCGTGGTGGCCCTATCCTGTTGGCTGCCGCTGCACA
AGCAGTTCCCAGGCGCCAAGGTGAACAGCGATGATGTGCCGATTTTCCAG
GCGCATGGCGACTACGATCCCGTGGTGCCGTACAAATTCGGCCAGCTGAG
CGCCAGCCTGCTCAAGTCGTTCATGAAGAATGTGACGTTCAAGACGTACA
GTGGACTATCGCACTCGTCGTCCGACGACGAAAATGGATGACGTCAAGGA
CATCATCAGTAAATGGGTAAACGCAAGCTTTCTAGACCAT
FMO01710.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18815-RC | 1181 | CG18815-RC | 143..793 | 21..672 | 3235 | 99.8 | Plus |
| CG18815-RB | 1237 | CG18815-RB | 199..849 | 21..672 | 3235 | 99.8 | Plus |
| CG18815-RA | 1247 | CG18815-RA | 209..859 | 21..672 | 3235 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11628960..11629505 | 103..649 | 2685 | 99.8 | Plus |
| 3L | 28110227 | 3L | 11628451..11628505 | 21..75 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:07 has no hits.
FMO01710.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:44 Download gff for
FMO01710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18815-RC | 130..799 | 8..680 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:11 Download gff for
FMO01710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18815-RA | 196..865 | 8..680 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:07 Download gff for
FMO01710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18815-RA | 196..865 | 8..680 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:07 Download gff for
FMO01710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11628440..11628501 | 10..71 | 91 | -> | Plus |
| 3L | 11628563..11628594 | 72..103 | 100 | -> | Plus |
| 3L | 11628961..11629504 | 104..648 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:11 Download gff for
FMO01710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11621663..11621694 | 72..103 | 100 | -> | Plus |
| arm_3L | 11621540..11621601 | 10..71 | 91 | -> | Plus |
| arm_3L | 11622061..11622604 | 104..648 | 99 | -> | Plus |
