FMO01712.5prime Sequence
1209 bp (1039 high quality bases) assembled on 2008-04-17
> FMO01712.5prime
AAAATACAAAGTTATCAGTCGACATGAACCGTCGCCTTCCAGGAACCATC
AGCCAGTGCCAGAAGCTTCTCCTAGCCACCCACAACCATGCTCCAACGGC
CTTCTCCACCAGATTCCTGTCCACATCTCGAGTGAACCGCGAGCGGCAAG
AATGCCAAGTGCTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCC
GCCAAGTTGTCCTCACGTTTGGGCAGCGACAAGGTGGTCGTCCTGGAACC
GGAAGATAAACATTACTACCAACCCATGTTCACCCTAATAGGAGGTGGTA
TGAAGAGATTGGATCAGAGCCACCGCCAAATGGCCGATGTGCTGCCCACA
AAGGCCAAATGGGTGAAGGAGAAGGCGCTGGAGTTCGATCCGGATAATAA
TACGGTTAGCACTTCTGGTGGCAAGACCATCAAGTACGACTTCCTGATCA
TCGCCACCGGACTGCAGCTCAATTATGGAAAGATACCTGGCCTGGTGGAG
GCCCTGGAGACCCCCGACAGTAATGTTTGCTCCATCTACTCGCCCAAGTA
CGTGGATCATGTGTACGAATGTCTGCGCAGGACCAACAAAGGAAATGCTA
TATTCACGTTTCCCAATTGTCCCATTAAGTGTGCAGGTGCACCGCAGAAA
ATCGCCTATATATCTGAGCACTACTTTAGGAAGATGGGTCGTCGCGACAA
CGTCAATATCATCTACAATACATCGCTTCCCGTGATTTTTGGTGTTAAGC
ATTACGCAGAGGCCCTGATGAAACTGATCAAGAGGAGAAATATCACGCTT
AATGTTCAAAGAAATCTCGTTGAAGTGAGACATAAAGATAATATAGCCGT
GTTCGAGGATCTCGCCAAACCAGGAGTTCACTATGAGGAAACGTACTCCA
TGCTTCATGTGACTCCGCCGATGAGCACTCCGGATGTGGTGGCCAACTGC
AGAAACTGGTAACCCCCCACTGGCTTTGTGGACGTCGACCAGTTGACGCT
GCAGCTCAACAAGTACAGCAACGTGTTCGCCATCGGGCGATTCGGCGTTC
AAGTTCCCAACTCGAAGAACGCCGCGGCCGCAGCCGCCCATCACCGTTGT
GTTCAAACGTAATGGCCGCATCGAAGGCAAGCCCACGGAATATCACCATG
ATCTGTCTGGCAATCGTCACGGCTTCAGCTCCTGGCTCCTGGCGTGAGAA
TTGGTATTT
FMO01712.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14997-RA | 1605 | CG14997-RA | 89..1269 | 24..1193 | 5230 | 97.1 | Plus |
| CG14997-RB | 1676 | CG14997-RB | 160..1340 | 24..1193 | 5230 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4240952..4241180 | 258..486 | 1130 | 99.6 | Plus |
| 3L | 28110227 | 3L | 4241492..4241703 | 682..893 | 1060 | 100 | Plus |
| 3L | 28110227 | 3L | 4241233..4241435 | 481..683 | 1015 | 100 | Plus |
| 3L | 28110227 | 3L | 4241903..4242090 | 893..1083 | 655 | 94.3 | Plus |
| 3L | 28110227 | 3L | 4240396..4240523 | 24..151 | 640 | 100 | Plus |
| 3L | 28110227 | 3L | 4240786..4240891 | 152..257 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:35 has no hits.
FMO01712.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:46 Download gff for
FMO01712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14997-RA | 86..1201 | 20..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:35 Download gff for
FMO01712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14997-RB | 158..1273 | 20..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:51 Download gff for
FMO01712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14997-RB | 158..1273 | 20..1134 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:51 Download gff for
FMO01712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4240394..4240523 | 20..151 | 98 | -> | Plus |
| 3L | 4240786..4240891 | 152..257 | 100 | -> | Plus |
| 3L | 4240952..4241176 | 258..482 | 100 | -> | Plus |
| 3L | 4241235..4241435 | 483..683 | 100 | -> | Plus |
| 3L | 4241494..4241703 | 684..893 | 100 | -> | Plus |
| 3L | 4241904..4242090 | 894..1083 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:35 Download gff for
FMO01712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4240394..4240523 | 20..151 | 98 | -> | Plus |
| arm_3L | 4240786..4240891 | 152..257 | 100 | -> | Plus |
| arm_3L | 4240952..4241176 | 258..482 | 100 | -> | Plus |
| arm_3L | 4241235..4241435 | 483..683 | 100 | -> | Plus |
| arm_3L | 4241494..4241703 | 684..893 | 100 | -> | Plus |
| arm_3L | 4241904..4242090 | 894..1083 | 94 | -> | Plus |
