FMO01713.5prime Sequence
635 bp (635 high quality bases) assembled on 2008-04-17
> FMO01713.5prime
ATAAAACAAAGTTATCAGTCGACATGGCCATGGACGACTACGATGATGAC
ATGAGCAGCGTGGGCGTGACCACGGCCCGAATCGAGAACCAGCACCAACA
GCACCCCCACCAGCAGGGTCAGCATGGACACCACCAACAGGGCCAGGGTC
AAAGCCAGTACAGCGCAGGGGCGGTCAAAGTGGGCGGATGGCGATACGAG
GACGCCAGTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGG
CATCGGGCATCTGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCC
AGGAGGGTCTTAGTCAAGGAGTGGGCTGCCTCTGGTTCGCGGATGGAGCA
AAATACGAAGGCGAGTTTCATCAGGGCTGGTTTCATGGTAATGGGATCTT
CTGGAGAGCCGATGGAATGAAGTACGAGGGCGAGTTTCGAGGCGGCAAGA
TCTGGGGCCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCC
AGAAACGAGGGATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATG
TCCCGAGGTGGTGCAGCGTGCACAAAAGTGCGCTCTTATGGCCCGTTCCC
AGTGCGAACACCCATACGCAAGCTTTCTAGACCAT
FMO01713.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rtp-RA | 960 | CG10233-RA | 57..650 | 24..617 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5236873..5237173 | 352..52 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 5236402..5236666 | 617..353 | 1325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2369 | 88..146 | 106 | 64.4 | Plus |
FMO01713.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:08 Download gff for
FMO01713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10233-RA | 54..655 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:04 Download gff for
FMO01713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtp-RA | 53..654 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:57 Download gff for
FMO01713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtp-RA | 53..654 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:57 Download gff for
FMO01713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5236398..5236666 | 353..621 | 99 | <- | Minus |
| 3R | 5236873..5237173 | 52..352 | 100 | <- | Minus |
| 3R | 5237232..5237263 | 17..51 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:04 Download gff for
FMO01713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1062120..1062388 | 353..621 | 99 | <- | Minus |
| arm_3R | 1062595..1062895 | 52..352 | 100 | <- | Minus |
| arm_3R | 1062954..1062985 | 17..51 | 91 | | Minus |
