FMO01715.5prime Sequence
1249 bp (866 high quality bases) assembled on 2008-04-17
> FMO01715.5prime
CAGTCGACATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCTCAAGTTTA
ATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGTGATTACAA
TGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCCGGAGTCAT
CCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGCCTGCCTGG
TTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTGCGGAACGT
GGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAAGGCAGATA
AGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCATACGAGAA
ACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAATCATTGAC
CTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCGCGCCCACT
GGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGCTCTGCAAG
CAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGGTCTGTCTG
GCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTTCTTTATGA
CTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATGAGGTCAAG
GATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGCCTAAGAAA
AGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCGCTGCCTAA
ACTTCTCCTCTTTAGATAACCTGCGTCAGTTTGCAGCAGAGCGTGATGGT
CAAAGGCATTCAGCTGAATTCATCCTGTAGTGCACAAGTGTACAAATGGA
TTAGTGCATCTCTTGGCAGGAGATGATGCTTACCCCGCCGATCCCGGATG
CAAGTAACGAAAAAATTGAAATCGATTTGTCAGTCAAGAATTCCGTTCCA
AGACGAATGCTAAATTTACATCGTTCGGACACTGGAACCAGCATCAGTCC
TCAGCTTGATAATTAGTTTGAGCGGAATGATTGGTCAGGTTTCTTCCTTT
GAATTCAACAAAATTACTAGCCTTTTCTAGAACTATCGTTGGGCGCCGCG
GGCCCAGTAAGTGGTCCTAATTAAAATCCTAAATCGATAATCTAATCCAC
ACCTGACCTTAGAGATCCTTGTTCAGAACATGTCTGGATCTCCTCGCAAA
AAAAAACGGCCCGCGGCGCGCACACGCAGCGCTTTCCGTAAAAACAAAA
FMO01715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10194-RA | 1215 | CG10194-RA | 34..1086 | 9..1066 | 4865 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19489300..19489642 | 659..317 | 1715 | 100 | Minus |
| 2L | 23513712 | 2L | 19488811..19489213 | 1066..659 | 1345 | 93.7 | Minus |
| 2L | 23513712 | 2L | 19489705..19489919 | 316..102 | 1075 | 100 | Minus |
| 2L | 23513712 | 2L | 19489978..19490071 | 102..9 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:29 has no hits.
FMO01715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:10 Download gff for
FMO01715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10194-RA | 13..1053 | 9..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:10 Download gff for
FMO01715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10194-RA | 34..1074 | 9..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:02 Download gff for
FMO01715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10194-RA | 34..1074 | 9..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:02 Download gff for
FMO01715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19488823..19489212 | 660..1054 | 94 | <- | Minus |
| 2L | 19489300..19489642 | 317..659 | 100 | <- | Minus |
| 2L | 19489705..19489919 | 102..316 | 100 | <- | Minus |
| 2L | 19489979..19490071 | 9..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:10 Download gff for
FMO01715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19488823..19489212 | 660..1054 | 94 | <- | Minus |
| arm_2L | 19489300..19489642 | 317..659 | 100 | <- | Minus |
| arm_2L | 19489705..19489919 | 102..316 | 100 | <- | Minus |
| arm_2L | 19489979..19490071 | 9..101 | 100 | | Minus |
