FMO01716.5prime Sequence
665 bp (665 high quality bases) assembled on 2008-04-17
> FMO01716.5prime
ATAAAACCAAGTTATCAGTCGACATGGAATCGACACTCGCCAAGGTGCTG
CTCCTTGTGGGCAGCCTGCTGATCCTGTGCCGCACCAGCCACGCCTTCAT
CGTCAGCGTGGACGCCCACAATGAGGAGTGCTTCTTCGAGAACGTCGAAG
GCGGCACCAAGTTTGGCGTCACCTTCGAGGTGATCGACGGTGGCTTCCTA
GACGTGGACATCAAGATCAGCGGCCCGGATAACCATGTGATGCACGAGAG
CGAAAAGGAGTCGTCCGGCAAGTACACCTTTGTGGCCCCCGCCAAGGGAA
CCTACACCGTGTGCTTCAACAACGAACGCAGCAGCATGACCCCCAAGCTG
GTCATGTTCTCCATCGACGTGGGTGACGCACCGCAACGTGCGCCCGGAGC
ACCCGGCGAGGAGGAGGTGGGCCACACCAAGCTGGAGGACATGATTCGGG
AGCTCTCCGGCACGCTGACCAGTGTCAAGCACGAACAGGAGTACATGCAT
GTGCGCGACAAGATCCATCGTTCGGTGAACGAGAACACCAACTCGCGAGT
GGTGCTGTGGTCCACCTTCGAAGCCCTCGTCCTGGTCCTGATGACAGTGG
GCCAGGTGTACTACCTGAAACGCTTCTTCGAGGTCAAGCGCGTCGTGGCA
AGCTTTCTAGACCAT
FMO01716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHOp24-RB | 1172 | CG3564-RB | 96..719 | 24..647 | 3120 | 100 | Plus |
| CHOp24-RA | 1104 | CG3564-RA | 96..719 | 24..647 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4541216..4541554 | 165..503 | 1695 | 100 | Plus |
| X | 23542271 | X | 4541907..4542053 | 501..647 | 735 | 100 | Plus |
| X | 23542271 | X | 4541003..4541145 | 24..166 | 715 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord2 | 7650 | accord2 QBERT 7650bp | 3518..3551 | 607..640 | 107 | 79.4 | Plus |
FMO01716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:12 Download gff for
FMO01716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3564-RA | 88..720 | 16..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:56 Download gff for
FMO01716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHOp24-RA | 90..722 | 16..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:11 Download gff for
FMO01716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHOp24-RA | 90..722 | 16..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:11 Download gff for
FMO01716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4540997..4541144 | 16..165 | 97 | -> | Plus |
| X | 4541217..4541551 | 166..500 | 100 | -> | Plus |
| X | 4541907..4542056 | 501..651 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:56 Download gff for
FMO01716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4435030..4435177 | 16..165 | 97 | -> | Plus |
| arm_X | 4435250..4435584 | 166..500 | 100 | -> | Plus |
| arm_X | 4435940..4436089 | 501..651 | 98 | | Plus |
