FMO01717.5prime Sequence
786 bp (786 high quality bases) assembled on 2008-04-17
> FMO01717.5prime
AAACCCAAGTTATCAGTCGACATGTTCGCAATCGCATTCGAGTGGTTTTG
TGCCTTTTGGTCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTG
TAAGTATGGTGATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCA
GCGAAAACTCGGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGAT
CCGTTGAAGGTGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCC
CGTGGGCATAACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGG
ACCAAAGGATCGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAG
CACGAAGTGAAAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAA
CATCCAGGGCAAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTA
ACATGACAATGGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCG
CTGGTGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAAC
GATGAAGCCGGAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGG
ACAAGGCGCTGGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAG
GCCATTTACAAGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACT
TTACCTGGGCGTCGTCAAAGGTGTGTTTCTCCAAACTGCCGTATGCCAAG
TTTTTTGCGGATGAATCGGCAAGCTTTCTAGACCAT
FMO01717.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-RB | 1253 | CG11853-RB | 10..757 | 21..768 | 3695 | 99.7 | Plus |
to-RA | 1038 | CG11853-RA | 10..757 | 21..768 | 3695 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25240867..25241172 | 462..768 | 1485 | 99.7 | Plus |
3R | 32079331 | 3R | 25240366..25240607 | 82..323 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 25240674..25240817 | 323..466 | 705 | 99.3 | Plus |
3R | 32079331 | 3R | 25240189..25240250 | 21..81 | 260 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:54:56 has no hits.
FMO01717.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:14 Download gff for
FMO01717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11853-RA | 10..763 | 21..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:28 Download gff for
FMO01717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 21..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:57 Download gff for
FMO01717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 21..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:57 Download gff for
FMO01717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25240189..25240250 | 21..81 | 98 | -> | Plus |
3R | 25240366..25240606 | 82..322 | 100 | -> | Plus |
3R | 25240674..25240813 | 323..462 | 100 | -> | Plus |
3R | 25240868..25241178 | 463..776 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:28 Download gff for
FMO01717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21065911..21065972 | 21..81 | 98 | -> | Plus |
arm_3R | 21066088..21066328 | 82..322 | 100 | -> | Plus |
arm_3R | 21066396..21066535 | 323..462 | 100 | -> | Plus |
arm_3R | 21066590..21066900 | 463..776 | 98 | | Plus |