Clone FMO01717 Report

Search the DGRC for FMO01717

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:17
Well:17
Vector:pMK33-CFH-BD
Associated Gene/Transcriptto-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01717.5prime Sequence

786 bp (786 high quality bases) assembled on 2008-04-17

> FMO01717.5prime
AAACCCAAGTTATCAGTCGACATGTTCGCAATCGCATTCGAGTGGTTTTG
TGCCTTTTGGTCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTG
TAAGTATGGTGATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCA
GCGAAAACTCGGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGAT
CCGTTGAAGGTGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCC
CGTGGGCATAACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGG
ACCAAAGGATCGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAG
CACGAAGTGAAAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAA
CATCCAGGGCAAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTA
ACATGACAATGGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCG
CTGGTGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAAC
GATGAAGCCGGAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGG
ACAAGGCGCTGGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAG
GCCATTTACAAGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACT
TTACCTGGGCGTCGTCAAAGGTGTGTTTCTCCAAACTGCCGTATGCCAAG
TTTTTTGCGGATGAATCGGCAAGCTTTCTAGACCAT

FMO01717.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
to-RB 1253 CG11853-RB 10..757 21..768 3695 99.7 Plus
to-RA 1038 CG11853-RA 10..757 21..768 3695 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25240867..25241172 462..768 1485 99.7 Plus
3R 32079331 3R 25240366..25240607 82..323 1210 100 Plus
3R 32079331 3R 25240674..25240817 323..466 705 99.3 Plus
3R 32079331 3R 25240189..25240250 21..81 260 98.4 Plus
Blast to na_te.dros performed on 2014-11-28 21:54:56 has no hits.

FMO01717.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:14 Download gff for FMO01717.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11853-RA 10..763 21..776 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:28 Download gff for FMO01717.5prime
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 21..776 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:57 Download gff for FMO01717.5prime
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 21..776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:57 Download gff for FMO01717.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25240189..25240250 21..81 98 -> Plus
3R 25240366..25240606 82..322 100 -> Plus
3R 25240674..25240813 323..462 100 -> Plus
3R 25240868..25241178 463..776 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:28 Download gff for FMO01717.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21065911..21065972 21..81 98 -> Plus
arm_3R 21066088..21066328 82..322 100 -> Plus
arm_3R 21066396..21066535 323..462 100 -> Plus
arm_3R 21066590..21066900 463..776 98   Plus