FMO01719.5prime Sequence
1243 bp (1038 high quality bases) assembled on 2008-04-17
> FMO01719.5prime
ATAATACCAAGTTATCAGTCGACATGCCGCGCGACTACGACAGAGACTAC
AACGAGGACGCCGCCGACTACAAGCGGAAGCGACGCGACGAGGAGCCAGC
GGCTACCGGTGCTCCAGAGACCCCTGAGGCGGATGGCGGCGGACACACCA
CCAGCCACGCCGCCCTGCGGGACACGCCCCAGCTGAATGAGAAGACCAAC
GCGTATCTGCAGGAGTGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCA
CATCATCACCAAGCGCTTACTTGACGACGAGGTGGAGAAGATCTTGGTCA
GCGGACGCATACCAAAGCCCGAGATATATGCCAACGTGTACAGCGAAAAG
CCCATCCGCGTGGCCCAGAAAGTCTTGTTCCCCATCAAGGAGTACCCCAA
GTTCAATTTCGTTGGCAAGATCCTGGGGCCCAAGGGCAACACACTGCGGC
AGCTGCAGGAAGAGACTATGTGCAAAATGGTGGTTATGGGGCGCAACTCG
ATGCGCGACCACGGTAAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAA
GTACGCCCATCTCAGCCGCGATTTGCACGTGGAGATATCCACGGTGGCCC
CTCCAGCGGAGGCCTATCACAGGATCAGCTATGCGCTAGGCGAGATCCGC
AAGTTTATGATACCCGACGCCAACGACGACATTCGGTTGGAGCAACTACG
CGAGATGGATGGCAAGGAGCGCATGTACAAGAAGTCTCACCACTATTCCA
AATCCTATGGCGATCATGGCGCCTACAGTTCCCGCACCCCGCCCCCTGCT
TCTTCAAAGCCCAAAGTCTATTCGATTCTGGAGAAGCTCGATATGTGATG
GACGATCCCAACTATGGGATCGTAAAGACGCACAGATCACGGGACCACGA
GCTATATGACCACCATGGAGAATATGATCGCTATGCCACACCGCCGCCCA
AACATCAAAGCACTCGACCCACCACGCCCAGTATGACAGTAGCTCCTACG
AGCGCGACTATCGGCGTGAGTTCACCCCCACTCGTCCTCTCTCCTACGCG
GGCGGCCTATCAGCAAACCAAGCACGGTCGTCATCATCGTCAATTCGACA
CCACCTCGGCTTCGGATCACATTCATTCTGCACATACGAACCTGAATCCG
GAATCCTCTGGAAGCTGCAATTCGCCTCGATCCAAATCCGGAAATCGGTC
ACGGCTTCCATGAAACATCTCGTTGGCGCGCGCGCGGACCCCA
FMO01719.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr58E-1-RA | 1592 | CG3613-RA | 124..1260 | 24..1149 | 5225 | 98.1 | Plus |
| qkr58E-1-RC | 2122 | CG3613-RC | 124..1165 | 24..1061 | 5065 | 99.4 | Plus |
| qkr58E-1-RD | 1902 | CG3613-RD | 124..1117 | 24..1015 | 4920 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22414570..22415075 | 784..279 | 2530 | 100 | Minus |
| 2R | 25286936 | 2R | 22415140..22415395 | 279..24 | 1280 | 100 | Minus |
| 2R | 25286936 | 2R | 22414127..22414286 | 1039..882 | 700 | 98.8 | Minus |
| 2R | 25286936 | 2R | 22414408..22414510 | 885..784 | 465 | 99 | Minus |
| 2R | 25286936 | 2R | 17471170..17471359 | 400..589 | 260 | 75.8 | Plus |
| 2R | 25286936 | 2R | 22595151..22595289 | 400..538 | 245 | 78.4 | Plus |
| 2R | 25286936 | 2R | 22466682..22466811 | 400..529 | 230 | 78.5 | Plus |
| 2R | 25286936 | 2R | 21773807..21773943 | 400..536 | 205 | 76.6 | Plus |
| 2R | 25286936 | 2R | 22651051..22651189 | 400..538 | 200 | 76.3 | Plus |
| 2R | 25286936 | 2R | 22410945..22411053 | 508..400 | 185 | 78 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:51 has no hits.
FMO01719.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:16 Download gff for
FMO01719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3613-RA | 148..1284 | 24..1149 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:10 Download gff for
FMO01719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr58E-1-RA | 124..1260 | 24..1149 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:28 Download gff for
FMO01719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr58E-1-RA | 124..1260 | 24..1149 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:28 Download gff for
FMO01719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22414101..22414282 | 886..1063 | 96 | <- | Minus |
| 2R | 22414408..22414509 | 785..885 | 99 | <- | Minus |
| 2R | 22414570..22415074 | 280..784 | 100 | <- | Minus |
| 2R | 22415140..22415395 | 24..279 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:10 Download gff for
FMO01719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18301606..18301787 | 886..1063 | 96 | <- | Minus |
| arm_2R | 18301913..18302014 | 785..885 | 99 | <- | Minus |
| arm_2R | 18302075..18302579 | 280..784 | 100 | <- | Minus |
| arm_2R | 18302645..18302900 | 24..279 | 100 | | Minus |
