FMO01720.5prime Sequence
976 bp (976 high quality bases) assembled on 2008-04-17
> FMO01720.5prime
CAGTCGACATGGAGCAAACAAGGCCATTTTACGATTTCAGCATACCATAC
AACAAGGACGACTCCGTGTTGCGGGCCCTGCTTAACGAGCTGGTGGAAAC
GGGCTACAAAACAGTGGCCATCGACCAGAGTTTCGACCACAGCAAAAAGG
ATCCGGGCAAACGTGGGTCCGAGATGTTTCCCGAGCCTCATAAGATCGAG
CATCTGCGCAAGGAGTTCCAGGACAAGCTGAGAATCCTGCAGAGAATCAC
CATTCTCTACGTAGACGTCAATGTGGCCCACGCGATGAGTGTCTCCCATA
ATCTGCGGAAGTTCAATCTCATCGCTGGCCAACCGAAAACAGATGCCGCC
CTGACGCACTGCTGCACTGCCTTCAATGGGGACTTGATAACTTTTGATCC
TGTGGCTGGGTCCCGACTCTTGGTAAACCGAAAAGCATACCAGGTGGCAG
TCCGTCGGGGCATGTTCTTCGAAATTAAATACGCTCCATCTATCTGCGAT
TCGAATAACAGGAAGGACATGATAAAGATCGCCCAGAACTATTGCACCAA
AGGGAAGTCCAAGAACGTTATCTTCAGCAGTGGTGCGGCGCACGAATTCC
AGCTGAGAGGACCTTACGACGTTGCTAATTTGGCCTTTATCTTCGGCCTA
TCAGAGGACCAAGGGAAAAATGCTGTGGACGGGCACTGCCGGGAACTTTT
CCTGAAGGCTGAGGCGCGTCGTCTGGGAAAAACCATCATGTTTCTCAAAG
GAAACGGTCCCATAATATACTCGGATAGCTCTGAGGACGAGAAAAGCACC
GAAGACGAAATGAAGGGTCTAAAACCGCAAATTGGAAAAGCGGATGCATT
TGAAGTCAAAGACGGAACTGAGCACGCTATTAAACGACTTAAAGTGGCGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGCCCAGGTAGTGGTCATAT
CATAATCATATCATAATCATAATCAC
FMO01720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpp30-RB | 1105 | CG11606-RB | 57..947 | 9..899 | 4455 | 100 | Plus |
| Rpp30-RA | 981 | CG11606-RA | 57..947 | 9..899 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 251526..251802 | 632..356 | 1385 | 100 | Minus |
| 2L | 23513712 | 2L | 251197..251464 | 899..632 | 1340 | 100 | Minus |
| 2L | 23513712 | 2L | 251979..252166 | 287..100 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 252227..252317 | 99..9 | 455 | 100 | Minus |
| 2L | 23513712 | 2L | 251856..251925 | 356..287 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:39 has no hits.
FMO01720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:18 Download gff for
FMO01720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11606-RA | 15..912 | 9..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:15 Download gff for
FMO01720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpp30-RA | 57..954 | 9..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:07 Download gff for
FMO01720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpp30-RA | 57..954 | 9..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:07 Download gff for
FMO01720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 251197..251464 | 632..899 | 100 | <- | Minus |
| 2L | 251527..251801 | 357..631 | 100 | <- | Minus |
| 2L | 251856..251924 | 288..356 | 100 | <- | Minus |
| 2L | 251979..252166 | 100..287 | 100 | <- | Minus |
| 2L | 252227..252317 | 9..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:15 Download gff for
FMO01720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 251197..251464 | 632..899 | 100 | <- | Minus |
| arm_2L | 251527..251801 | 357..631 | 100 | <- | Minus |
| arm_2L | 251856..251924 | 288..356 | 100 | <- | Minus |
| arm_2L | 251979..252166 | 100..287 | 100 | <- | Minus |
| arm_2L | 252227..252317 | 9..99 | 100 | | Minus |
