FMO01721.5prime Sequence
1222 bp (1023 high quality bases) assembled on 2008-04-17
> FMO01721.5prime
ATAAAACAAAGTTATCAGTCGACATGTATGCGCTTCCGGGAATCCAGATT
CTGTTGCTGATTGCTTCAGTCAGCGTGGTGACCGAGTACTGCGACAATGG
AACGGGCGAGTGCAAGGAGCTGACGCCCTCCGACTGTCCAGTGATATTCT
ACAACCAGCACCTGATCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAAC
GACATTGTCTGCTGTCCCATACCGCTGGATCACCAGAATCTGAAGCCAGC
CGAACAGACGAGGCCTTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCA
GATCCGCCTGCCAGTCCACGCCCTTCATCGTGGGCGGCACAAAGGCATCC
GGTAAAGAGTTTCCCTTCATGGCCCTAATCGGCACTCATCGGCCCAACAA
GTCCAAGTCGGACATCAATTGGGATTGTGGTGGATCCGTGGTGCATCCCA
AATTCGTACTGACTGCGGCGCATTGCCTGGAGACGGATGAATCGAAGGCC
GAGCGACTGGACCCAAACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGG
GGAGCTGGACTACAACAGCACCACCGATGATGCTCTGGTTCAGGACTTTC
GGGTGGTCAACTATGTGGTGCACCCTGGATATGATACTGAAGACGAAGAG
CAGGGCTTTAAAAACGATATTGCCCTGGTGGAACTGGATCGGAAGGCTGA
GTTCAACGACCATGTGGCAGCGGTATGCCTTCCGCCAGACAGCGGCAACG
ATGTTCAGCATGTCACAGCCGCCGGCTGGGGATTTACCGCGGACGGTGTG
AAGTCCTCGCACCTGCTGAAGGTCAACCTCCAGCGATTCAGTGACGAGGT
GTGCCAGAGCGCCTGCGTTTCAGCATCGATACACGCACCCAGTTCTGTGC
CGGCTCAATGTCCAGCCAAGCGGACACCTGCAACGGTGACTCCGGCGACC
TATATTCGTCCAGCATCCGCTCTATCCGTGCCTGAGCAGTCATAGGATTG
TCTCTATGGATTAGTTTGTGCTCCAGGACTCCCGATGTCTATACCAAGTC
CACCTCTTACCGACTGGATCGAGAGCATCGGTGGGGGCATCAGGCTTTCT
AGAACATCGTTCGGCGCGCGGCAAGTAATGTCTAAATCGATCCAAACCTA
AGCTATCCAACTAGCTAAGGAATCTGCATGACATAGGGTCTGGATCTCCA
CCAATATACGTGCCCTCGATCG
FMO01721.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3700-RA | 1183 | CG3700-RA | 31..1106 | 24..1086 | 5035 | 98.6 | Plus |
| CG4927-RC | 1449 | CG4927-RC | 450..628 | 444..622 | 220 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22895060..22895661 | 491..1080 | 2420 | 97.3 | Plus |
| 2R | 25286936 | 2R | 22894465..22894717 | 24..276 | 1265 | 100 | Plus |
| 2R | 25286936 | 2R | 22894783..22894996 | 277..490 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 16573258..16573333 | 547..622 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:10 has no hits.
FMO01721.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:25:41 Download gff for
FMO01721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3700-RA | 1..1080 | 23..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:50 Download gff for
FMO01721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3700-RA | 29..1108 | 20..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:41 Download gff for
FMO01721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3700-RA | 29..1108 | 20..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:41 Download gff for
FMO01721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22894456..22894717 | 11..276 | 97 | -> | Plus |
| 2R | 22894783..22894996 | 277..490 | 100 | -> | Plus |
| 2R | 22895060..22895670 | 491..1090 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:50 Download gff for
FMO01721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18781979..18782240 | 11..276 | 97 | -> | Plus |
| arm_2R | 18782306..18782519 | 277..490 | 100 | -> | Plus |
| arm_2R | 18782583..18783193 | 491..1090 | 97 | -> | Plus |
