FMO01726.5prime Sequence
1230 bp (1068 high quality bases) assembled on 2008-04-17
> FMO01726.5prime
CAGTCGACATGAAATATTTTGGCGGAGTCGAAGGCGGAGCCACCCACTCC
AGACTGGTCATCTGCGATGAGAGCGGCCAATCTGTGGGCGCCACCAGCGG
CCTGGGCACCAATCACTGGGGCATTGGCATTCCGGAGTGCGCCCGCCGGA
TCGCTGACATGGTGGAGCGGGCGAAGGAGGAGGCGGGCATTCCCAAGGAG
ACGCCCCTCACAAGTCTGGGATTGAGCCTTAGCGGCTGCGAGCAGGAGGC
CACCAATCGCGAGCTGGAGCAGGAGCTGCGCACCACGTTTCCGGGCCTGG
CCCAGAACTATGCCGTGTCCAGCGACACCATGGGCAGCATGTACACCGCC
TCGTCCATCGGAGGAATGGTCCTTATTTCAGGAACCGGATCCAATTGCCT
GCTGCGTAACCCTGACGGCTCCACGTCCAATTGTGGCGGCTGGGGCAACT
TCCTCGGGGACGAGGGAAGCGCCTGGTACATCTCGTATCGCGCAGTCAAG
GTGGTGTTCGACCATATGGACAACTTTGAGCAGTCAGCGGCTCCCGTGGA
GAAAACTTGGAGTCTGATCAAGGAGCACTTTAGTTTGGAGACGCGCCTGG
ATATGCTGCCGCACTGTTACGCCAAGTTCGACAAGCCCTTCTTCGCCAAT
CTGTGCAAAAAGCTGTCGCAGAACGCCGAAAATGGAGACGAACTGGCGCG
CAGCTTGTTTCGCGAAGCTGGCGTTCATCTGGCCAGAATGATCCTTGCCC
TGCTGCCCAATGTGCACCAGGATCTGGTCAAGTCCGGGGACCTAAGCGTA
GTGTGCGTAGGATCCGTGTGGTCCAGCTGGGATCTGCTGCAGGAGGCCTT
CATCAGTGAACTCGCTAAGACAACCATCGACTTCGACCTCAAGCTGGTGC
GCATCACCAAGAGCAGTGCCTACGGAGCCTGCTACCTGGGTGCGGATAGT
GCGGACTTCGATCTTCCGAGAAACTATGCCGACACGTCACAGTACTGTAC
ACGTACACGATCCTCGAAGAAAGCCAAAGCCACCAACGGCTGTAACTGGT
GCAGCTTTCTGAACAATTCGTTGGGCGGCGGGCCCAGTAAGTGTAAAATC
ATAATCAAATACTAATCAAAATCCAACTAGCTAGGAAAATTCTGACCATG
AACATGCTTGATTCCACAATTAAAGCCGGGCGAAACGGAGCGCTCTACAA
TTTCAGATAGTGGACTCTGTGAGACTTGAT
FMO01726.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6218-RB | 1400 | CG6218-RB | 223..1265 | 9..1048 | 5140 | 99.7 | Plus |
| CG6218-RA | 2091 | CG6218-RA | 369..1411 | 9..1048 | 5140 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15338588..15339168 | 1048..471 | 2755 | 99.5 | Minus |
| 3R | 32079331 | 3R | 15339360..15339588 | 471..243 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 15339678..15339890 | 246..34 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:47 has no hits.
FMO01726.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:27 Download gff for
FMO01726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6218-RA | 361..1415 | 1..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:14 Download gff for
FMO01726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6218-RA | 361..1415 | 1..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:13 Download gff for
FMO01726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6218-RA | 361..1415 | 1..1054 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:13 Download gff for
FMO01726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15338588..15339167 | 472..1048 | 99 | <- | Minus |
| 3R | 15339360..15339585 | 246..471 | 100 | <- | Minus |
| 3R | 15339679..15339889 | 35..245 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:14 Download gff for
FMO01726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11164310..11164889 | 472..1048 | 99 | <- | Minus |
| arm_3R | 11165082..11165307 | 246..471 | 100 | <- | Minus |
| arm_3R | 11165401..11165611 | 35..245 | 100 | <- | Minus |
