FMO01728.5prime Sequence
1271 bp (1017 high quality bases) assembled on 2008-04-17
> FMO01728.5prime
TATAAAACGAAGTTATCAGTCGACATGCATACCGTGTACGCGCTTCTGAA
GAACAAGCTGAGCGATGTGCATCCCCTACACAACATCGATCTGACGCGGG
ATGTGGCCTACCTAAAGGCGGTGGTGACCAAAGAGATGCACTTGCAATTC
GACGCCAGCGAGTTGGAGATCATCCACCACGGACGCGTGCTGGAGGACGC
AGACACCCTCAACCGAACGCTGCAGCCCAACGCCGTGATCCACTGCTTTC
AGAAGATTAAACGTTACTCGCCGTATGTGCCGCCAGCCGCCGCCGAAATC
AACACGAAGCATATTCAAGAGCTGTTTTCGTTGACCTCGCACCTGCAAAT
CAGCGTTACCTCGCGGTTCAACATTCTGCAGAAGATACTCGCTGAGTATC
CGGAATTTAGGCGAAATCTGGGCGCCCAGGCCCTTATTCGCGACTCCGTA
CTGTTCAACATGCTGCACGAGCCGGAAGTGGTCCAAAATCTCGTTAAAGA
TTATCCCCTCATCTGCGAGGCCGCTCCATTCATAGTGGACACCATTCGCA
AGGAGCTAGCCAGAAATAGCTCGGCCACGCAGTTGCAGGAGCAAGCTGCT
TCGGAGTCTACTACTTCGTCAGAGGAGGAAAACTCTCTGGGTGCAGGCAG
CAGCAGCAGTGGTGGAAGCAGCAGCACAGCCGTGGCAGCTGCCGCGGCCG
CCAATCGGCGTGATGAGATGGCCAACATCCGTCAGATTAGCCGCCAGCAA
CTGGCTAACGCATTGGCTAACGTGACCCCGTTTAATTCACTGTCGAATAT
TGCGCAGAGAAACGCGGACGAGGCCGTGCAGGGTGATGAAAGACCTAGAA
CCACCTCGGCGCCATTAGCAGCGTTGGAGGAGCAGCGGGAACAGGCGCAG
GAAGCAGCAGTGGAGCCATCAGCAGCGGATCCATATCCTCAGAGTTGCTC
CGCAACGAGCTGGCCCGCGCTTTTCAGTCTCTGTCGCAGATCTACCGGCG
TCTGTGAGAACATGGAGGTGAGTTCGGGAGAAGGACCAGTAACAGAGCAA
GCCGCCCCAGCACAGCCGATGATGTAAATGACGAGACGATGGGTGGAGAC
AACAGTGATGTGCTGCCACGCCGCTATCCGGTCGCCATTCGGTTCCCCGA
ACAACTGGCGTACCATGCCGCCCATGGGCCTTCCTTAATCACCTCGAACG
TTAGTTATCCTGACTTCCGAAGTGGAGAGTGTGGACACCGCCTATATATA
CTCTGCCTATAGCGTGAGCAC
FMO01728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3223-RA | 1488 | CG3223-RA | 89..1274 | 25..1209 | 5395 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8010178..8010773 | 584..1179 | 2305 | 95 | Plus |
| 3R | 32079331 | 3R | 8009702..8010119 | 166..583 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 8009488..8009629 | 25..166 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:55:06 has no hits.
FMO01728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:29 Download gff for
FMO01728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3223-RA | 107..1316 | 15..1220 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:34 Download gff for
FMO01728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3223-RA | 78..1287 | 15..1220 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:02 Download gff for
FMO01728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3223-RA | 78..1287 | 15..1220 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:02 Download gff for
FMO01728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8009487..8009629 | 25..166 | 99 | -> | Plus |
| 3R | 8009703..8010119 | 167..583 | 100 | -> | Plus |
| 3R | 8010178..8010817 | 584..1220 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:34 Download gff for
FMO01728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3835209..3835351 | 25..166 | 99 | -> | Plus |
| arm_3R | 3835425..3835841 | 167..583 | 100 | -> | Plus |
| arm_3R | 3835900..3836539 | 584..1220 | 95 | | Plus |
