FMO01729.5prime Sequence
757 bp (757 high quality bases) assembled on 2008-04-17
> FMO01729.5prime
AACAAAGTTATCAGTCGACATGGACGCGAAGACGTTGATACTGTTGACCG
TGGCCGTGGCCATATTCGCCTGCCACACGATCGCACAGCCACATTACATT
GAGGTGTCCGAGGAATCAGAGGAATGGTGTCCACCAGAAAATAACAATAC
CGATAATAACAATCCGAATAGAACCGATCACGACTCCGCCCTGTGCGCCA
ACTTCCAGCACATTCGCGCTATGATCAATCAGGAGGCCCTGCTCAATCTG
ATCGAGGTGCACTACAATTGTGATCTGAAGTTCCGCCGCGCCATGCGGTA
CTACAACACAGCCGGATTCGAGAGGACCACCCAGCAGCTCACGGATACGG
ATGCCTACAAGACCGTTCTCAAGGAACTGCAGTCGGAGAGCGTGGATACC
GCCGACATTGAGACCGTGGCGGATATCTTCCATTGCATCATACTGCCCGT
CCGCCAGCCCGATCGCAACTGCGACTGCAAGGCCGTGAAGCACCACACCT
TCGTCGGCGATCTGCTCTCCATCATGCCGAAGCAGGAGGTGCACAACTAT
GTGGCACAGTCCCAGGCGAATCACACCAACTTCGGCAACTTCACCAAGGC
GGTGGTCTCCAAGCAATTCCAGGCCACGCTCAAGGCCAACATTAACAAGC
GCGACGTGGTGAAGCCACTGCGCACCCTGCGCAAGAACGGCTGGGACATC
CCAGAGCTGCTACGCGCCATGCTGACCATCTTCCAGTGGGCAAGCTTTCT
AGACCAT
FMO01729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3906-RA | 849 | CG3906-RA | 26..745 | 20..739 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23511577..23512200 | 643..20 | 3120 | 100 | Minus |
| 2R | 25286936 | 2R | 23511390..23511485 | 739..644 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:06:00 has no hits.
FMO01729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:31 Download gff for
FMO01729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 17..744 | 13..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:45 Download gff for
FMO01729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 18..745 | 13..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:06 Download gff for
FMO01729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 18..745 | 13..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:06 Download gff for
FMO01729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23511390..23511485 | 644..739 | 100 | <- | Minus |
| 2R | 23511577..23512205 | 13..643 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:45 Download gff for
FMO01729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19398913..19399008 | 644..739 | 100 | <- | Minus |
| arm_2R | 19399100..19399728 | 13..643 | 99 | | Minus |
