FMO01730.5prime Sequence
638 bp (638 high quality bases) assembled on 2008-04-17
> FMO01730.5prime
AAAAAACCAACTTATCAGTCGACATGCGCTTTAACAAGCCGGAACTGAAC
TCCCTGGCCAGCAATCCAGCAACGCGATTCGACAAGGAGGGCCTGCTCAT
CATCACCGATCGCCAGGAGGGCTTCCTGTGGCGCTCTAGCGAAGTCAGAG
TTGAACGTTGGTGTAAACTGCGTGGAAATTTACTGTTCTACCTCAAGGAT
AAGGACCCCAAGTCAGCGGTGGCCGGCCTCCTGGTGCTGGAGAACTGTCG
TGCGCGCATTCAGAATGAGGAGCGTGATTCCGAGGGCTACGTATTCGATT
TAGACTTCAAGGACAGCCCATCGGAACGTTTCATTACACGTTCGTCGGCC
GAACGCCTGGCCTGGGTGCAGTGCATCGAGCACGCATCCAGCGAGAAGCT
AAACGCGCTCATACGCCAGCTAAAGGAACAGATTGTTAGCCAGAGCCGCC
AGCCCAGCAGCGGGGCGTCATCCTCCATGGGCAATCACATTGACCTCGGC
ATGCCGCTGGAGCAGCAAATGCAGGAGCAGCTACAGCTGCACGGCCAGCC
GGCGGAGGAGTTGTCCGTGCCCGTGCCCACGGAGGTGGTGGCGCCGTTTG
AAGGTGATCTTATACAGTTCGCAAGCTTTCTAGACCAT
FMO01730.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42271-RB | 1352 | CG42271-RB | 313..910 | 23..620 | 2990 | 100 | Plus |
| CG42271-RC | 4403 | CG42271-RC | 313..893 | 23..603 | 2905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14232724..14233042 | 620..302 | 1595 | 100 | Minus |
| X | 23542271 | X | 14233105..14233265 | 303..143 | 805 | 100 | Minus |
| X | 23542271 | X | 14233421..14233542 | 144..23 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:42 has no hits.
FMO01730.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:32 Download gff for
FMO01730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33248-RA | 295..899 | 16..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:32 Download gff for
FMO01730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42271-RB | 309..913 | 16..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:50 Download gff for
FMO01730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42271-RB | 309..913 | 16..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:50 Download gff for
FMO01730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14232721..14233040 | 304..624 | 99 | <- | Minus |
| X | 14233105..14233263 | 145..303 | 100 | <- | Minus |
| X | 14233421..14233546 | 16..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:32 Download gff for
FMO01730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14126754..14127073 | 304..624 | 99 | <- | Minus |
| arm_X | 14127138..14127296 | 145..303 | 100 | <- | Minus |
| arm_X | 14127454..14127579 | 16..144 | 97 | | Minus |
