FMO01731.5prime Sequence
1220 bp (1049 high quality bases) assembled on 2008-04-17
> FMO01731.5prime
ATAAAACAAAGTTATCAGTCGACATGGACAACTTCGGACTGGGCGGATCG
GATCTAAGCAAGGGGCAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGC
CTCGCTGATCACATATTATTCGGTGAAATGGATGATGAACCAGATGGATC
CGACCAGTAAAAACAAGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTT
AAGAGGCTAGCCGAGCAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAG
CGACTACGAGCTTATGATTGCGTCACATCTTGTTGTTCCCGCCGACATAA
CAGTCAGTTGGGCCGATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTC
CGGGAATCGGTGGTGCTGCCAATCCAGCACAAGGATCTCTTCAAGCATTC
GAAGCTGTGGCAGGCGCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCT
GTGGAAAGACGCTGATAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGC
TTTATCAACTTGGACGTCGCCATTCTTACCGACAAGTGGTACGGGGAATC
CCAGAAATTGACTTCTGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCAT
GCATTATTTTTATTGACGAAATAGACTCATTTTTGCGATCTCGAAACATG
AACGACCACGAGGCTACCGCCATGATGAAGACCCAGTTTATGATGCTGTG
GGATGGCCTCAGCACGAACGCCAACTCGACGGTGATTGTGATGGGTGCCA
CGAACAGGCCGCAGATTTAGACAAGGCCATTGTGCGCCGCATGCCAGCCC
AATTCCACATTGGTCTGCCCTCGGAGACCCAACGAAAAGACATCCTGAAG
CTGATCCTCCCATCGGAGGAAGTAAGTCAGGATGTCGACTTGAATCGCTT
GTCCAAGCTCACAAATGGCTTCTCGGGCTCAGACCTGCGGGAAATGTGCC
GGATGCTTCAGTTTACCGAATGAGCAGCTCATCACGTCAGAGATCGTCAG
CTACAGCGCTTGATCGCACACGTCGCATCACCATGACGATTTGCTGGGCT
CGCACTAAATTACGATCAAGATGCCCACGAGCAGCCTATTCTTAAAGAAT
AGAATCGAATAAAGCAGCTTTCTAACATTCGTTGCGCGCGCGCCCAGGTA
ATGCTAATCAATCCTAATCTATCCTATCACACTAGCTAGGAATCGTTCTA
TGACATAGAGCTGTGAATTT
FMO01731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmd-RC | 1719 | CG5395-RC | 110..1213 | 22..1110 | 5115 | 98.3 | Plus |
| nmd-RA | 1300 | CG5395-RA | 110..1213 | 22..1110 | 5115 | 98.3 | Plus |
| nmd-RB | 1172 | CG5395-RB | 164..1085 | 204..1110 | 4205 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10302679..10303600 | 1110..204 | 3925 | 97.8 | Minus |
| 2L | 23513712 | 2L | 10303654..10303838 | 206..22 | 925 | 100 | Minus |
| 2L | 23513712 | 2L | 14766281..14766683 | 304..706 | 320 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:37 has no hits.
FMO01731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:34 Download gff for
FMO01731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5395-RA | 103..1211 | 16..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:13 Download gff for
FMO01731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmd-RA | 105..1213 | 16..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:45 Download gff for
FMO01731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmd-RA | 105..1213 | 16..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:45 Download gff for
FMO01731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10302679..10303598 | 206..1110 | 97 | <- | Minus |
| 2L | 10303655..10303843 | 16..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:13 Download gff for
FMO01731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10302679..10303598 | 206..1110 | 97 | <- | Minus |
| arm_2L | 10303655..10303843 | 16..205 | 98 | | Minus |
