FMO01734.5prime Sequence
1038 bp (1038 high quality bases) assembled on 2008-04-17
> FMO01734.5prime
CAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGGCGCAATCT
CCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAGGAGCCCCT
GCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGCGGTGCCCT
GGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGCAGCCCATC
ATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGACAGGCTGTG
CCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCTGCCCGGGC
ACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCATCTTCTGG
GACGGCATATGCCTGATTCGCCGGATAGTCCGCAAGTATAACTGGAAGAA
CGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTTCATGTACG
CGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCGATATCGCG
GGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACTGGCAGGGC
GCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAAGCAGCCCT
GCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGTACGATGGG
TCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGAATGAGGCA
CAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAGGCTAAAAG
TAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCTACGCACGC
CAGATTCGCTGTCGCGTGCTCAACATTCGGGGTATTCCCGGCATGAAGTT
CGAGACGCCACAGGTGTATGCGGATGTGATTGCCACGCTGCGGGAGAATG
CCGCGAAGTGGTCTACGTTGAGGTGCCCGGCACCCATCATCTGCACTGGT
CACCCCGGGATCGAGTGGCGCCCCACATTATTCGATTCTGAAGAGCGGCA
AGCTTTCTAGACATTCGTTTGGCGCCGCGGGCCCAGGT
FMO01734.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kraken-RB | 1240 | CG3943-RB | 88..1075 | 8..993 | 4845 | 99.6 | Plus |
| kraken-RA | 1320 | CG3943-RA | 168..1155 | 8..993 | 4845 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 853544..854368 | 165..988 | 3980 | 99.6 | Plus |
| 2L | 23513712 | 2L | 853192..853278 | 79..165 | 435 | 100 | Plus |
| 2L | 23513712 | 2L | 852935..853005 | 8..78 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:09 has no hits.
FMO01734.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:21 Download gff for
FMO01734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3943-RA | 161..1161 | 1..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:56 Download gff for
FMO01734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kraken-RA | 160..1160 | 1..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:21 Download gff for
FMO01734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kraken-RA | 160..1160 | 1..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:21 Download gff for
FMO01734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 852927..853005 | 1..78 | 94 | -> | Plus |
| 2L | 853192..853278 | 79..165 | 100 | -> | Plus |
| 2L | 853545..854379 | 166..999 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:56 Download gff for
FMO01734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 852927..853005 | 1..78 | 94 | -> | Plus |
| arm_2L | 853192..853278 | 79..165 | 100 | -> | Plus |
| arm_2L | 853545..854379 | 166..999 | 99 | -> | Plus |
