FMO01735.5prime Sequence
1204 bp (1028 high quality bases) assembled on 2008-04-17
> FMO01735.5prime
TATAATACAAAGTTATCAGTCGACATGTGGACCTGCCTCTGCCAGCTCTG
TTTCTATCTACTCTCGACGCTTGCAGTCGCTGCGCTGTCGATTGCGGCTC
TGGTGCTCTACAAGACGAAGCCCTATCCCAACATCAAGCGGCACAAGGAT
GAGGAGACCTTCCTGGACCCGCACACCATTAAAACAGTGACTTTTCCCAG
TCTCGAGGACTCGCCAAGTTTGGAGCTCAGTGTCATCGTACCAGCTTACA
ATGAGGAGCAGCGCTTGCCTTCTATGCTGGACGAGTGCTTGGCCTTTCTG
GAACAGAAATCTGCTGGCACTCCCAATTTCACATACGAGGTCATCGTGGT
CAGTGACGGCAGTCAGGATGCCACCGTATCCGTCGCCTTGGGTTACTCGA
AAAAGCACGGAGCAGAAAAGGTACGCGTGCTGGAACTCATCGAAAATCGT
GGGAAAGGAGGTGCCGTTCGCATGGGTATGCTAAGTGCACGGGGTCGTAA
TCTGCTCTTCGCTGATGCGGATGGAGCCACCAAGTTTCCCGACTACGATA
AACTGGAGGTGGCCCTCAAGCAATTAGCTCCCGAATGGCGAGACGATGGC
ATTGCCATTGGATCGAGAGCACATCTGGAGAACGATGCGATTGCAACAAG
GAGTTTCTTCAGAACAATTTTGATGCACGGCTTTCATTTCCTCGTCTGGC
TGTTTGCCGTGCGCTCCATTCGCGATACCCAGTGTGGCTTCAAGCTGTTC
ACCCGAACGACGGCCAGGAAACTCTTCACCAGTCTGCATGTGGAGCGCTG
GGCCTTTGATGTTGAGCTGCTGTACCTCGCTGAGAATTTGAAGCTACCAA
TGTCCGAGGTTGCCGTTCGATGGACGGAGATCGATGGTTCGAAACTGACA
CCATTTTGGTCGTGGCTGCAATGGGCAGGATTTGTTCATGATCTGGGTGC
GATATTGGTGGGCGCCTGCCGGATGCTCATACAGAAGAAGGAAAAGGCAA
GCTTCTAGATCATTCGTTTGGCGCGGCGGGACCAGGTAGTGGTCATATCA
TTATCATATCATAATCATATCACACTAGCTAAGGGAATCCTGTCATGACT
ATGCCTGGAATTCTCACATAAAACGCCGGCGGCTACCGAAGCGTCTGACA
TTCGATGGATCTGAAGCTTACTGATCATACACGGGAATCAGCGAACTCAC
ATCC
FMO01735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wol-RA | 1335 | CG7870-RA | 163..1140 | 25..996 | 4725 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8301936..8302332 | 662..266 | 1985 | 100 | Minus |
| 2L | 23513712 | 2L | 8301565..8301882 | 974..660 | 1425 | 98.7 | Minus |
| 2L | 23513712 | 2L | 8302524..8302699 | 265..90 | 880 | 100 | Minus |
| 2L | 23513712 | 2L | 8302758..8302823 | 90..25 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:29 has no hits.
FMO01735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:23 Download gff for
FMO01735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7870-RA | 161..1138 | 25..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:30 Download gff for
FMO01735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wol-RA | 163..1140 | 25..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:29 Download gff for
FMO01735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wol-RA | 163..1140 | 25..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:29 Download gff for
FMO01735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8301540..8301879 | 663..996 | 97 | <- | Minus |
| 2L | 8301936..8302332 | 266..662 | 100 | <- | Minus |
| 2L | 8302524..8302698 | 91..265 | 100 | <- | Minus |
| 2L | 8302758..8302823 | 25..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:30 Download gff for
FMO01735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8301540..8301879 | 663..996 | 97 | <- | Minus |
| arm_2L | 8301936..8302332 | 266..662 | 100 | <- | Minus |
| arm_2L | 8302524..8302698 | 91..265 | 100 | <- | Minus |
| arm_2L | 8302758..8302823 | 25..90 | 100 | | Minus |
