FMO01739.5prime Sequence
1210 bp (1038 high quality bases) assembled on 2008-04-17
> FMO01739.5prime
CAGTCGACATGCTGGGTGTTGTTGGGGTGCTCCTCCTGGTGGCGTTCGCC
ACACTGCTGCTGTGGGATTTCCTCTGGCGCAGGCGGGGCAATGGTATATT
GCCGGGTCCGCGGCCACTTCCCTTCCTGGGCAACCTGCTCATGTATCGCG
GTCTAGATCCTGAACAAATAATGGACTTTGTCAAGAAGAACCAGCGCAAG
TACGGTCGCCTTTACAGGGTGTGGATTCTCCACCAGTTGGCCGTCTTCTC
CACGGATCCCCGAGACATTGAGTTCGTCTTGAGCAGCCAACAGCATATAA
CCAAGAATAATCTGTACAAGCTACTTAACTGCTGGCTGGGCGATGGATTG
CTGATGAGCACGGGCAGGAAGTGGCATGGACGCAGAAAGATCATCACGCC
CACCTTCCACTTCAAGATTTTGGAACAGTTCGTCGAGATATTCGACCAAC
AAAGCGCCGTAATGGTGGAGCAGCTTCAGTCGCGCGCCGACGGCATGACT
CCCATTAACATCTTTCCGGTGATTTGTCTCACTGCCCTGGATATAATCGC
AGAAACTGCAATGGGCACAAAAATCAATGCCCAAAAAAATCCCAATCTGC
CCTATGTCCAGGCTGTCAATGATGTCACCAACATCTTGATTAAACGTTTT
ATCCACGCTTGGCAGCGGGTGGACTGGATTTTCCGGCTAACGCAGCCAAC
AGAAGCTAAACGCCAGGACAAAGCTATCAAGGTAATGCACGACTTTACCG
AGAACATTATCCGTGAGCGGCGTGAAACGCTGGTTAACAACTCGAAAGGA
AACAACCCCAGAAGAGGAAGTTAATTTCTTGGGCCAAAAGCGACGGATGG
CTCTGCTGGATGTGCTGCTGCAGTCCACAATCGATGGCGCCCCGTTGAGC
GATGAGGATATCCGCGAAGAGGTTGACACGTTTATGTTCGAGGGCCATGA
CACGACTACCTCGGCGATTTCATTCTGTTTATATGAAATCTCAAGGCATC
CGGAGGTCACAGCGTCTGCAGCAGAGATCCGCGACGTCCTCGGCGAGATC
GAAGACCCAGTTACCCTTCTTGATCTTGGGTGGCTGAGTTTATGGAGAAC
GTAATTAAGAGTTGTGTGACTGACGTCAAGTGCCATGAATCGGTCCTGTC
CTGGATGGAAAACGTGGCAGCATTCCTCGGGCACCACCTTACATGGGGCA
CCTTGGTCCT
FMO01739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d2-RB | 2467 | CG3466-RB | 902..2008 | 9..1109 | 5275 | 98.9 | Plus |
| Cyp4d2-RA | 1582 | CG3466-RA | 17..1123 | 9..1109 | 5275 | 98.9 | Plus |
| Cyp4d14-RB | 1694 | CG3540-RB | 921..1051 | 830..960 | 355 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2177721..2178213 | 623..1109 | 2050 | 97.2 | Plus |
| X | 23542271 | X | 2177151..2177537 | 166..552 | 1920 | 99.7 | Plus |
| X | 23542271 | X | 2176907..2177063 | 9..165 | 785 | 100 | Plus |
| X | 23542271 | X | 2177592..2177663 | 551..622 | 360 | 100 | Plus |
| X | 23542271 | X | 2174058..2174188 | 960..830 | 355 | 84.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:09 has no hits.
FMO01739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:42 Download gff for
FMO01739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3466-RA | 8..1138 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:38 Download gff for
FMO01739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d2-RA | 8..1138 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:36 Download gff for
FMO01739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d2-RA | 8..1138 | 1..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:36 Download gff for
FMO01739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2177151..2177537 | 166..552 | 99 | -> | Plus |
| X | 2177594..2177663 | 553..622 | 100 | -> | Plus |
| X | 2176898..2177063 | 1..165 | 97 | -> | Plus |
| X | 2177721..2178215 | 623..1110 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:38 Download gff for
FMO01739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2070931..2071096 | 1..165 | 97 | -> | Plus |
| arm_X | 2071184..2071570 | 166..552 | 99 | -> | Plus |
| arm_X | 2071627..2071696 | 553..622 | 100 | -> | Plus |
| arm_X | 2071754..2072248 | 623..1110 | 97 | -> | Plus |
