FMO01740.5prime Sequence
1212 bp (1058 high quality bases) assembled on 2008-04-17
> FMO01740.5prime
CAGTCGACATGAGAGAATACAGCCTGTGTATGATTGTGATAGCAGCTTTC
ATTGCCAGCCAGCTGGACAGCACCTCAGCCCTCCAGTGCTATTCGTGCAC
ATCGACGACGAATGACACTGGAAATTGTTTAACGAGTCCATCTACTCAAA
CTTCTATAGAGTGTGATAATGAATGCTATACTCTTATTAACGCAGGAACT
CTAACTCGTGGCTGCTTGATTAATGGCACTGCGTGCACCTTACCATCCTG
CTCGACCTGCAAGGAAGACAATTGCAATTTGAATTTGGTGTGCCAGCAGT
GCCTCGGCGAAGCGAATTGCGCCACGACCAACGTGACGGATACGCAATAC
AATGCAGTGTGCCCCAATAATGGACAGGTCTGCGTGAATCAGTTGAATGA
CAACAAGACGGTGACCCGTCAATGTGGTGACCCCTGTGCTGCTGGAACGG
AATCCACGTGCTCCTCATGCTCGGCATCCCTGTGCAATGTGGGACTATTC
CCCGCCAATCGTCGCCAGTGCTATAATTGCTCAGGAGAGAACTGCAATGC
GGTCTCAAATACCTTGGTCGCGGGATGTAGTCAAATCGATGCCGGGTGCT
TCACCACCGGAACGTCTGCGAGCAACATGACCCGTGGTTGCACATCGGCC
ACCACGGAAATCAAGTGTGCGTCGGACAGCACTGATCCCAGTTGCCTCGT
CTGCAACTCCGACTTTTGCAATAGTCCGACCTACGAACGAGAGGCCGGTT
CCTGTATCATTTGCGAGAACTGTGCGGAGCAACAGGTTGCTACCAATGCG
AAGTCCTGCGGACAGGCCAAGTACAACCAGGAAGTCGGGTGTTATACCAT
GACCTCAGGAACCAATGTTACCCGAGGGTGCCTAAACACCTTGGAGGCTG
GCTGCTCTACAACCAATGCCTGCACTTCCTGCTCGAAATGGCTGCAATGT
GCTGCGGCGAGTTCAGTGCATTACATGCATTTCGAATGAGTTTCCGGCTG
CTGGTCGCAAATATTCCGACACGCTCCCTTTGATCAACTGCCCAATGACG
TGCTACAGCGGGTCTGAATGACTTGGGAGTGCGAGAATGTTAACGCCTGC
CGCCCACTGATGCAATCATGCATGCAAATGGAGGCCTCATTGCAATTGTT
ACGGAGACAGGCAGAGGTACCTCATGGACCGGCCACTCAGAATGTGGGCG
GTTCTCGCCTCT
FMO01740.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10650-RB | 1784 | CG10650-RB | 80..1254 | 8..1157 | 5095 | 96.9 | Plus |
| CG10650-RA | 1527 | CG10650-RA | 80..1254 | 8..1157 | 5095 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18994166..18995023 | 1043..194 | 3915 | 98.7 | Minus |
| 2L | 23513712 | 2L | 18995601..18995712 | 196..85 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 18995779..18995855 | 84..8 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:48 has no hits.
FMO01740.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:44 Download gff for
FMO01740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10650-RA | 69..1172 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:35 Download gff for
FMO01740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10650-RA | 73..1176 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:53 Download gff for
FMO01740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10650-RA | 73..1176 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:53 Download gff for
FMO01740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18994166..18995021 | 196..1043 | 98 | <- | Minus |
| 2L | 18995602..18995712 | 85..195 | 100 | <- | Minus |
| 2L | 18995779..18995858 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:35 Download gff for
FMO01740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18994166..18995021 | 196..1043 | 98 | <- | Minus |
| arm_2L | 18995602..18995712 | 85..195 | 100 | <- | Minus |
| arm_2L | 18995779..18995858 | 1..84 | 95 | | Minus |
