FMO01743.5prime Sequence
823 bp (823 high quality bases) assembled on 2008-04-17
> FMO01743.5prime
ATAAAACAAAGTTATCAGTCGACATGCTGAAAACCGCTGTTAGCCGCTTT
TTACAAATTAGTTCAGTACAATGTGGCGGCCGGGCGAATTCTGTTCGCAA
CATCAACCTGATTCCCATGGTGGTCGAGCAAACTGGCCGCGGTGAGCGGG
CCTACGACATATTCTCACGTCTGCTGAAGGAGCGTATAATTTGCCTTATG
GGCAACATAACCGACGACATCAGTTCGACTGTGGTGGCTCAACTGCTGTT
CCTGCAATCGGAGAACGTCAACAAACCGATCCATCTGTACATCAATTCGC
CCGGCGGTGTTGTTACAGCGGGTTTGGCGATCTACGATACGATGCAGTAC
GTCAAGCCACCCATTGCAACTTGGTGCGTTGGACAGGCCTGCTCGATGGG
ATCCCTCCTGCTCGCGGCCGGTGCTCCTGGCATGCGGTACTCCCTACCCA
ACGCGCGAATAATGATACATCAGCCCTCTGGTGGCGCACAAGGCCAAGCC
ACAGACATCCTAATACATGCTGAGGAAATTATCAAAATCAAGCGCCAGCT
GACCAACATCTACGTGAAGCACGCCAAGAATACGTACGAGGAGATGTCCG
GACGCATGGAGCGCGACCACTTCATGACCCCCGAGGAGGCAAAAGTGCTG
GGCATCATTGACCACGTGCTTGAACATCCTCCAGAGACTGTTTCCGAAAC
GGGACCCGCGTCGGACGGCGGCGTCACCTCCGGCAAAGCCGTGCCCGAGG
AGTGCGAGAAGAAGAGAAGCAAGCACGCAGCCGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCGGTA
FMO01743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5045-RB | 1175 | CG5045-RB | 120..879 | 23..782 | 3785 | 99.9 | Plus |
| CG5045-RA | 973 | CG5045-RA | 120..879 | 23..782 | 3785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10357010..10357436 | 66..492 | 2135 | 100 | Plus |
| 2L | 23513712 | 2L | 10357485..10357782 | 485..782 | 1445 | 99 | Plus |
| 2L | 23513712 | 2L | 10356914..10356959 | 23..68 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:58 has no hits.
FMO01743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:50 Download gff for
FMO01743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5045-RA | 166..939 | 16..792 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:18 Download gff for
FMO01743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5045-RA | 114..887 | 16..792 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:20 Download gff for
FMO01743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5045-RA | 114..887 | 16..792 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:20 Download gff for
FMO01743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10356908..10356956 | 16..65 | 94 | -> | Plus |
| 2L | 10357010..10357435 | 66..491 | 100 | -> | Plus |
| 2L | 10357492..10357790 | 492..792 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:18 Download gff for
FMO01743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10356908..10356956 | 16..65 | 94 | -> | Plus |
| arm_2L | 10357010..10357435 | 66..491 | 100 | -> | Plus |
| arm_2L | 10357492..10357790 | 492..792 | 98 | | Plus |
