FMO01749.5prime Sequence
1216 bp (1018 high quality bases) assembled on 2008-04-17
> FMO01749.5prime
ATAATACAAAGTTATCAGTCGACATGCCTAACATTGCAGTTATCGGTGCC
GGGGTTAATGGTGTTGCCAGTGCCATTAAGATACTGGAACACTATGTGAA
CGATGGAAAGACACCCATAAAGGTGACGATCATATCGGAGGACTTCACGC
CTAACACAACTGGAGATGGTTCGGCTGGTCTCTGGGGTCCGTACCTTCTG
GGCGGCACTTCGCAGGCGAAAGTCTACAAGTGGTCGAAGAGCATGCACCA
ATTTTTGGAGAAGATCTGGCTGAGCGAGGATGCCGGAGAGGCTGGCGTTT
GTCTGCTACCCTGCATTCGGCTGAGCACCTCAACGGTGGACACGGTCGAA
GATTTTTGGCGTGACATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACA
GCTGGCTGCCTACAATAAAGGTCGCAGCGTTAAGTTCACGTCTGGTTTAT
CCTTTGTTACCTACACCTCGGAGCCCATTAAGCTACTGCCGTATTTGATG
AAGCGTTTCACCCGAAATGGAGGTGTTGTTGTCCGGAAAAGGATTACAGA
CCTGGATGCATTTGTAGCCGATTCCGAGTACGATGTGATAGTCAATTGCT
CCGGATTGGGCTCTAAGACCCTACTAAACGACGATCAAATGTACGCAGTG
CGTGGCCAAGTTTCCCGGGTGAGGGCCAACTGGATTTTCTCTGCCGTGCT
GGACGAGAGTGATGATGGCAACTATATTATACCCAACACCGAAAGTGTTG
TCCTGGGCGGAACCCATCAGGAGCGGGACTACAACACTAAAGTCTGCCAG
AACGACAGGCGGATGATCGTCGATGGCTGTCAGCGGTACATTCCTGGTTT
GGAGCACACGGAGTGCCTTTTTGATTGGGTAGGTCTCCGGCCGGGTCGCC
ACCCAACTCCGACTGGAAAGCCGAGCGCCGCGGCCGCAGCTCCTCATCCA
CAACTATGGACATGGCGGCAGTGAGTCACTTTGTGCTGGGGCTGTGCCGA
CGATGTCCTCATATCCTGTTGCCGCCAGACGATCCAAATTAGCAAGCTTT
CTAAGACCATTCGTTTGGCGCGCGCGGGCCAGGTAGTGTCATATTCATAA
TCTAATCATATCTAATTCCACTAGGCTAGAAATTCTGGTCCTGAACTTGC
CTGAATTCTACAATAAACGCCTGGGCGCAACGGACGTTGGTACACATTCC
TAGATGGATTCTCGTA
FMO01749.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11236-RA | 1181 | CG11236-RA | 42..1047 | 24..1027 | 4875 | 99.3 | Plus |
| CG11236-RB | 1172 | CG11236-RB | 42..1038 | 24..1027 | 4730 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6803592..6803888 | 440..736 | 1485 | 100 | Plus |
| 2L | 23513712 | 2L | 6803946..6804231 | 737..1021 | 1175 | 97.9 | Plus |
| 2L | 23513712 | 2L | 6803310..6803524 | 227..441 | 1075 | 100 | Plus |
| 2L | 23513712 | 2L | 6803052..6803254 | 24..226 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:55 has no hits.
FMO01749.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:00 Download gff for
FMO01749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11236-RA | 16..1028 | 17..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:37 Download gff for
FMO01749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11236-RA | 38..1050 | 17..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:56 Download gff for
FMO01749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11236-RA | 38..1050 | 17..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:56 Download gff for
FMO01749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6803048..6803254 | 17..226 | 98 | -> | Plus |
| 2L | 6803310..6803522 | 227..439 | 100 | -> | Plus |
| 2L | 6803592..6803888 | 440..736 | 100 | -> | Plus |
| 2L | 6803946..6804220 | 737..1011 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:37 Download gff for
FMO01749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6803048..6803254 | 17..226 | 98 | -> | Plus |
| arm_2L | 6803310..6803522 | 227..439 | 100 | -> | Plus |
| arm_2L | 6803592..6803888 | 440..736 | 100 | -> | Plus |
| arm_2L | 6803946..6804220 | 737..1011 | 98 | == | Plus |
