FMO01752.5prime Sequence
1245 bp (540 high quality bases) assembled on 2008-04-17
> FMO01752.5prime
ATAATACAAAGTTATCAATCGACATGAATCTATCTGATTCACCGTTGAAT
AATTCCCTCGTGGAAGTGGATGAAATGCGCCTAGGCTATGACCACGAATC
CATCATGTCCTTTCTCCGGAAGTCGTCCATCAAGCATTTGTTTCCTTACG
CTGCAGAAACCACAGACGGCAAACAGTTGCTGAATCGCATGATGGCTACC
TTAGCCGGGAAGCTGGAACTCAATTTGCAGCAGCTGCTCGATCTGTTTAC
CCTCTCCATTATGATGATGACGTACCAAAGGGACAACGTTCTGCTGATGA
AGGAGCGCTACATGATGGTGGATGTGGTGTGTCACCTGGCACAGTCCCTG
GACTCGGAGGAGATGTTCTACATGGCCAGTGGGTTGTACGAAAACCTTAT
CACTGGCGTGGGTATGGAGCGCCTGGAAAGAGTGCTGGACCTGCAGGCCG
CGATTCCCGCCATGGTAGAATCCTGCCATCTTGGCAACGATGTAGCTATG
GCCCTGCTACTCACCATAATGGGACGGTACACGGGAGAACCAGTTGAACT
GGACCAGAAGGAATATGCTCTCAAGGCTTTTGAAATGGCCAAAACGGTCA
ACTGGCGCCAGTTGGCAAACAGTGGACGCCAGGCAGATTTGTTTATGCTC
ATCCGCACTGTTCAGCATGATCATCAATTGCAGACGTATACGCGAGGAGT
GTCCTGATTGGAAGGACAATCTGGGTGCCGAGATACACATTACTTCCTGC
AGGTGCGCATGGGATCACTCCGGCGTCTATGGCGACTTTGAAATGATGAT
TGAACGATTCATAGCTTATTGCGTGGGTCGGGGCGCCTCAACAACGCCCC
AACTTTGCAGCTTCAAGATTCCCGAGCAACAAATTCAGAGTTCCTAGCCA
GCTTTCTAGACAGTCTGTTGGGCGCCGGGCCCAGGTAAGAGGTCATAATC
ATATCATCATCATAATCATAATCACCAACTAGCCTAGAGATCCTGGTCAT
GACTATTGCTGTGATTCTTCACAATAAAAAACCGCTCCGCGGTAACGGAG
CGTTCTGAACAAATTCAGATGGGTTCCGAGGTCTTACTAGAACTGCAACG
GAATTCAGCTATCCTCTAATCCATTCCGCCCCTGCTGGCCATTCCTGCCT
ACTGGTTGTAATTATTTAGCTTCGTCCAACTGGTCTTTCCGACGTCTATG
AGTAACCTGAATGCCTAGGGTTGCTGACACTTGTACGCCCCTGCG
FMO01752.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33107-RA | 1067 | CG33107-RA | 75..945 | 24..894 | 4145 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22583987..22584193 | 567..361 | 1035 | 100 | Minus |
| 3R | 32079331 | 3R | 22583699..22583929 | 798..567 | 970 | 97.4 | Minus |
| 3R | 32079331 | 3R | 22584250..22584437 | 362..175 | 925 | 99.5 | Minus |
| 3R | 32079331 | 3R | 22584492..22584644 | 176..24 | 750 | 99.3 | Minus |
| 3R | 32079331 | 3R | 22583594..22583642 | 846..798 | 230 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:07 has no hits.
FMO01752.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:07 Download gff for
FMO01752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33107-RA | 160..1039 | 16..894 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:42 Download gff for
FMO01752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33107-RA | 66..945 | 16..894 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:02 Download gff for
FMO01752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33107-RA | 66..945 | 16..894 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:02 Download gff for
FMO01752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22583699..22583929 | 567..798 | 97 | <- | Minus |
| 3R | 22583988..22584191 | 363..566 | 100 | <- | Minus |
| 3R | 22584250..22584435 | 177..362 | 99 | <- | Minus |
| 3R | 22584492..22584653 | 16..176 | 97 | | Minus |
| 3R | 22583595..22583641 | 799..845 | 97 | <- | Minus |
| 3R | 22583474..22583523 | 846..894 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:42 Download gff for
FMO01752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18409196..18409245 | 846..894 | 94 | <- | Minus |
| arm_3R | 18409317..18409363 | 799..845 | 97 | <- | Minus |
| arm_3R | 18409421..18409651 | 567..798 | 97 | <- | Minus |
| arm_3R | 18409710..18409913 | 363..566 | 100 | <- | Minus |
| arm_3R | 18409972..18410157 | 177..362 | 99 | <- | Minus |
| arm_3R | 18410214..18410375 | 16..176 | 97 | | Minus |
