FMO01754.5prime Sequence
1207 bp (1015 high quality bases) assembled on 2008-04-17
> FMO01754.5prime
CAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGGATGCTGTG
CGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAATCTGCACT
TGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATCCTTTGCCT
TTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTGGCAAGGTT
CTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAATCGTCAAG
GGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTGCAAGTTGG
TGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGCCCAGCATC
CATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTGTCGGCCAT
AATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGCTTCACTGG
TGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGGCGGAGCAG
GAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAAGGACAACT
CCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCTTAATCTTT
ACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAACTGCGGCAG
AAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCAAGTCCTCA
CGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTACTCCAAGG
AGCCGCTTATCCAGTTGGCAGATCTGAAATCCAAACGGGCTGTTCATATT
AACGCTGTGGGAGCCGGCGAAGTTCACTTTTCGGAGGTGGCTCCAAAGAT
TTACCAGCAGGCCAAGGTCTACGTGGATTGCTATGCCAATGCCGAGGCTG
ATTGGTGGGATTACCTGCGCCGATCACGCTGAAGTGGTCAGATCATTCTG
GATGGAAACTATCCCAGGAGCTAGAAATCAGCATCTTTCATCCATGGGCA
TGCCTCGGAGGACGCCTGTGTGGCCAGCGGTTCAAGATTGCATTATCTCC
TAGCGCAAGATTCGCAAGCTTTCTAACATTCGTTGGCCGCGGCCCAGGTA
AGTGGGCTATAATCTAACTATCTATATCCAACTAGCCTAGGATCTGGCAT
GACATGGCCTGAATCCACCAAAAAGTCCGGGGCACCGAGACGTTCTGTAA
CCAAATC
FMO01754.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4872-RA | 1283 | CG4872-RA | 109..1165 | 9..1058 | 5050 | 99.1 | Plus |
| CG9104-RA | 1707 | CG9104-RA | 1544..1607 | 1058..997 | 210 | 92.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16881455..16882250 | 9..804 | 3980 | 100 | Plus |
| X | 23542271 | X | 16882320..16882510 | 804..990 | 755 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:52 has no hits.
FMO01754.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:25:41 Download gff for
FMO01754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4872-RA | 86..1149 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:37 Download gff for
FMO01754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4872-RA | 109..1172 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:40 Download gff for
FMO01754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4872-RA | 109..1172 | 9..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:40 Download gff for
FMO01754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16881455..16882250 | 9..804 | 100 | -> | Plus |
| X | 16882321..16882518 | 805..997 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:37 Download gff for
FMO01754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16775488..16776283 | 9..804 | 100 | -> | Plus |
| arm_X | 16776354..16776551 | 805..997 | 97 | -> | Plus |
